Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain H061 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1486103 bp
Thymine Count
1481906 bp
Guanine Count
3332923 bp
Cytosine Count
3325138 bp
Genome Length
9626070 bp
Protein-coding Genes
8481 genes
Non-Coding Genes
143 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nucleoside diphosphate kinase | APR52_25890 | C5CXG2 | Negative | 5569902 - 5570327 | 15235.3 |
| hypothetical protein | APR52_25895 | Not Available | Negative | 5570635 - 5571393 | 27239.5 |
| tetr family transcriptional regulator | APR52_25900 | Not Available | Negative | 5571484 - 5572188 | 26586.8 |
| poly(hydroxyalkanoate) granule-associated protein | APR52_25905 | Not Available | Negative | 5572370 - 5572882 | 18100.4 |
| thioesterase | APR52_25910 | Not Available | Negative | 5573001 - 5573450 | 16027.4 |
| lysr family transcriptional regulator | APR52_25915 | Not Available | Negative | 5573587 - 5574501 | 33602.6 |
| gentisate 1,2-dioxygenase | APR52_25920 | Q9S3U6 | Positive | 5574685 - 5575761 | 39710.1 |
| fumarylacetoacetate hydrolase | APR52_25925 | Not Available | Positive | 5575826 - 5576530 | 25489.6 |
| salicylate hydroxylase | APR52_25930 | Q5EXK1 | Positive | 5576542 - 5577783 | 44957.7 |
| tctc | APR52_25935 | Not Available | Positive | 5577845 - 5578831 | 35015.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
