Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain H061 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1486103 bp
Thymine Count
1481906 bp
Guanine Count
3332923 bp
Cytosine Count
3325138 bp
Genome Length
9626070 bp
Protein-coding Genes
8481 genes
Non-Coding Genes
143 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | APR52_24880 | Not Available | Positive | 5365986 - 5366501 | 18778.2 |
| gamma-glutamyl kinase | APR52_24885 | C5CXX2 | Negative | 5366572 - 5367711 | 40290.6 |
| gtpase obg | APR52_24890 | A1W4B0 | Negative | 5367790 - 5368866 | 38979.9 |
| 50s ribosomal protein l27 | APR52_24895 | C5CXX4 | Negative | 5368938 - 5369198 | 8942.93 |
| 50s ribosomal protein l21 | APR52_24900 | C5CXX5 | Negative | 5369211 - 5369522 | 11295.9 |
| octaprenyl diphosphate synthase | APR52_24905 | P0AD57 | Positive | 5369707 - 5370699 | 34776.7 |
| Trna-pro | Not Available | Not Available | Positive | 5370744 - 5370820 | Not Available |
| general secretion pathway protein gspe | APR52_24915 | Q6FF45 | Positive | 5370942 - 5372675 | 62622.4 |
| type ii secretion system protein f | APR52_24920 | P22609 | Positive | 5372706 - 5373941 | 45069.3 |
| peptidase a24 | APR52_24925 | Q9ZEL6 | Positive | 5373941 - 5374906 | 34501.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
