Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain H061 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1486103 bp
Thymine Count
1481906 bp
Guanine Count
3332923 bp
Cytosine Count
3325138 bp
Genome Length
9626070 bp
Protein-coding Genes
8481 genes
Non-Coding Genes
143 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycerol-3-phosphate transporter permease | APR52_24780 | Q92WD8 | Positive | 5346778 - 5347659 | 32929.6 |
| glycerol-3-phosphate transporter | APR52_24785 | Q8YCB0 | Positive | 5347723 - 5348571 | 31013.0 |
| glycerol-3-phosphate transporter atp-binding subunit | APR52_24790 | Q7VYN2 | Positive | 5348589 - 5349596 | 36978.1 |
| glycerophosphodiester phosphodiesterase | APR52_24795 | P10908 | Positive | 5349604 - 5350344 | 26556.7 |
| mechanosensitive ion channel protein mscs | APR52_24800 | Not Available | Positive | 5350415 - 5352838 | 84941.5 |
| asnc family transcriptional regulator | APR52_24805 | Not Available | Negative | 5352857 - 5353327 | 17408.3 |
| abc transporter substrate-binding protein | APR52_24810 | Not Available | Positive | 5353585 - 5354508 | 31306.7 |
| abc transporter permease | APR52_24815 | Not Available | Positive | 5354585 - 5355481 | 30949.2 |
| abc transporter atp-binding protein | APR52_24820 | Q8U648 | Positive | 5355481 - 5356275 | 29048.6 |
| gcn5 family acetyltransferase | APR52_24825 | Not Available | Positive | 5356272 - 5356772 | 17645.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
