Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain H061 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1486103 bp
Thymine Count
1481906 bp
Guanine Count
3332923 bp
Cytosine Count
3325138 bp
Genome Length
9626070 bp
Protein-coding Genes
8481 genes
Non-Coding Genes
143 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter substrate-binding protein | APR52_23820 | Not Available | Negative | 5150105 - 5151007 | 32777.6 |
| diguanylate cyclase | APR52_23825 | Not Available | Negative | 5151042 - 5151728 | 24218.8 |
| hypothetical protein | APR52_23830 | Not Available | Negative | 5151735 - 5152712 | 34278.8 |
| lysr family transcriptional regulator | APR52_23835 | Not Available | Positive | 5152850 - 5153773 | 33297.0 |
| hypothetical protein | APR52_23840 | Not Available | Positive | 5153876 - 5154325 | 16339.0 |
| phosphoesterase pa-phosphatase | APR52_23845 | Not Available | Positive | 5154520 - 5155083 | 19470.3 |
| glycosyl transferase family 2 | APR52_23850 | Q55487 | Positive | 5155122 - 5156093 | 35721.4 |
| glycosyl transferase family 39 | APR52_23855 | Q4KC80 | Positive | 5156090 - 5157655 | 57159.3 |
| hypothetical protein | APR52_23860 | Not Available | Positive | 5157652 - 5158503 | 30197.8 |
| rna polymerase subunit sigma | APR52_23865 | Not Available | Positive | 5158607 - 5159116 | 18748.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
