Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain H061 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1486103 bp
Thymine Count
1481906 bp
Guanine Count
3332923 bp
Cytosine Count
3325138 bp
Genome Length
9626070 bp
Protein-coding Genes
8481 genes
Non-Coding Genes
143 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase subunit sigma | APR52_22855 | Not Available | Positive | 4941043 - 4941579 | 19863.0 |
| hypothetical protein | APR52_22860 | Not Available | Positive | 4941576 - 4942571 | 35896.8 |
| ligand-gated channel protein | APR52_22865 | Not Available | Positive | 4942694 - 4945165 | 89716.1 |
| rna polymerase subunit sigma | APR52_22870 | Not Available | Positive | 4945258 - 4945770 | 19222.2 |
| histidine kinase | APR52_22875 | P23485 | Positive | 4945851 - 4946777 | 33220.7 |
| porin | APR52_22880 | P16869 | Positive | 4946846 - 4949320 | 88973.2 |
| hypothetical protein | APR52_22885 | Not Available | Positive | 4949420 - 4950214 | 27282.5 |
| luxr family transcriptional regulator | APR52_22890 | Q9KL18 | Positive | 4950251 - 4951702 | 50837.8 |
| hypothetical protein | APR52_22895 | Not Available | Negative | 4951707 - 4952309 | 21744.4 |
| abc transporter substrate-binding protein | APR52_22900 | Not Available | Positive | 4952480 - 4953505 | 36743.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
