Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain H061 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1486103 bp
Thymine Count
1481906 bp
Guanine Count
3332923 bp
Cytosine Count
3325138 bp
Genome Length
9626070 bp
Protein-coding Genes
8481 genes
Non-Coding Genes
143 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| squalene synthase hpnd | APR52_22235 | O07333 | Negative | 4785057 - 4785896 | 31449.9 |
| squalene synthase hpnc | APR52_22240 | P55351 | Negative | 4785893 - 4786819 | 34099.8 |
| potassium transport protein kup | APR52_22245 | Q8XYY5 | Positive | 4786950 - 4788794 | 66081.2 |
| rnd transporter | APR52_22250 | A4WCC0 | Positive | 4788912 - 4790108 | 41133.0 |
| multidrug transporter acrb | APR52_22255 | Not Available | Positive | 4790105 - 4793311 | 115862.0 |
| Trna-leu | Not Available | Not Available | Positive | 4793497 - 4793583 | Not Available |
| trigger factor | APR52_22265 | C5CJT3 | Positive | 4793610 - 4794929 | 48688.9 |
| atp-dependent clp protease proteolytic subunit | APR52_22270 | C5CJT4 | Positive | 4795046 - 4795654 | 22232.9 |
| atp-dependent clp protease atp-binding subunit clpx | APR52_22275 | C5CJT5 | Positive | 4795782 - 4797047 | 46248.8 |
| dna-binding protein | APR52_22280 | P0A9M1 | Positive | 4797167 - 4799605 | 89241.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
