Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain H061 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1486103 bp
Thymine Count
1481906 bp
Guanine Count
3332923 bp
Cytosine Count
3325138 bp
Genome Length
9626070 bp
Protein-coding Genes
8481 genes
Non-Coding Genes
143 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aspartate ammonia-lyase | APR52_21825 | P44324 | Positive | 4698075 - 4699529 | 51700.6 |
| abc transporter substrate-binding protein | APR52_21830 | Not Available | Positive | 4699698 - 4700597 | 32178.6 |
| glutamate abc transporter permease | APR52_21835 | P0AER4 | Positive | 4700690 - 4701418 | 26796.2 |
| amino acid abc transporter permease | APR52_21840 | P0AER7 | Positive | 4701420 - 4702109 | 25564.0 |
| amino acid abc transporter atp-binding protein | APR52_21845 | Not Available | Positive | 4702148 - 4702885 | 27040.3 |
| nrdr family transcriptional regulator | APR52_21855 | C5CPY1 | Negative | 4703387 - 4703830 | 17107.7 |
| serine hydroxymethyltransferase | APR52_21860 | C5CPY0 | Negative | 4703855 - 4705099 | 44834.9 |
| lytic transglycosylase | APR52_21865 | Not Available | Negative | 4705320 - 4706186 | 30608.8 |
| hypothetical protein | APR52_21870 | Not Available | Positive | 4706784 - 4710656 | 136118.0 |
| hypothetical protein | APR52_21875 | Not Available | Positive | 4710889 - 4713756 | 101005.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
