Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain H061 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1486103 bp
Thymine Count
1481906 bp
Guanine Count
3332923 bp
Cytosine Count
3325138 bp
Genome Length
9626070 bp
Protein-coding Genes
8481 genes
Non-Coding Genes
143 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribosomal large subunit pseudouridine synthase c | APR52_20070 | Q9CM51 | Negative | 4316515 - 4317576 | 38305.7 |
| ribonuclease e | APR52_20075 | P44443 | Positive | 4318136 - 4321396 | 118959.0 |
| lysr family transcriptional regulator | APR52_20080 | P16931 | Negative | 4321443 - 4322291 | 31124.7 |
| mfs transporter | APR52_20085 | P34698 | Positive | 4322435 - 4323979 | 53406.4 |
| heme biosynthesis protein hemy | APR52_20090 | Not Available | Negative | 4323981 - 4325279 | 47721.1 |
| hypothetical protein | APR52_20095 | Not Available | Negative | 4325296 - 4326396 | 39350.2 |
| uroporphyrinogen iii synthase | APR52_20100 | Not Available | Negative | 4326393 - 4327166 | 26789.9 |
| porphobilinogen deaminase | APR52_20105 | Q21XQ9 | Negative | 4327172 - 4328098 | 33294.2 |
| phosphoenolpyruvate carboxylase | APR52_20110 | A1WGR0 | Positive | 4328194 - 4331040 | 105181.0 |
| aldehyde-activating protein | APR52_20115 | Not Available | Positive | 4331052 - 4331456 | 14590.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
