Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain H061 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1486103 bp
Thymine Count
1481906 bp
Guanine Count
3332923 bp
Cytosine Count
3325138 bp
Genome Length
9626070 bp
Protein-coding Genes
8481 genes
Non-Coding Genes
143 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| chromosome partitioning protein parb | APR52_19245 | Q72H91 | Negative | 4148536 - 4149444 | 32858.3 |
| cobyrinic acid ac-diamide synthase | APR52_19250 | Q1DEM0 | Negative | 4149441 - 4150229 | 28266.2 |
| transposase | APR52_19255 | Not Available | Positive | 4151157 - 4151456 | 10478.2 |
| type iv secretion system protein virb3 | APR52_19260 | Not Available | Positive | 4151466 - 4151855 | 14672.2 |
| conjugal transfer protein | APR52_19265 | Q6FYW7 | Positive | 4151846 - 4154353 | 93171.3 |
| type iv secretion system family protein | APR52_19270 | Not Available | Positive | 4154346 - 4155080 | 27228.7 |
| conjugal transfer protein trbl | APR52_19275 | Q6FYW5 | Positive | 4155317 - 4156363 | 37083.6 |
| hypothetical protein | APR52_19280 | Q2YJ78 | Positive | 4156534 - 4157262 | 26714.6 |
| conjugal transfer protein trbg | APR52_19285 | Q2YJ79 | Positive | 4157301 - 4158101 | 29475.9 |
| conjugal transfer protein | APR52_19295 | Not Available | Negative | 4159120 - 4161060 | 71473.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
