Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain H061 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1486103 bp
Thymine Count
1481906 bp
Guanine Count
3332923 bp
Cytosine Count
3325138 bp
Genome Length
9626070 bp
Protein-coding Genes
8481 genes
Non-Coding Genes
143 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| doxx family protein | APR52_18255 | Not Available | Negative | 3952942 - 3953358 | 14461.1 |
| quercetin 2,3-dioxygenase | APR52_18260 | P73623 | Negative | 3953444 - 3954145 | 25314.8 |
| lysr family transcriptional regulator | APR52_18265 | A1A8H0 | Positive | 3954306 - 3955259 | 34269.5 |
| amine oxidase | APR52_18270 | Not Available | Positive | 3955484 - 3956482 | 36068.9 |
| glutamyl-q trna(asp) ligase | APR52_18275 | Q21X72 | Positive | 3956523 - 3957437 | 32993.1 |
| trna (guanine-n7)-methyltransferase | APR52_18280 | A1W7D2 | Positive | 3957434 - 3958177 | 27590.0 |
| hypothetical protein | APR52_18285 | Not Available | Negative | 3958194 - 3958667 | 16471.8 |
| abc transporter substrate-binding protein | APR52_18290 | Not Available | Positive | 3958751 - 3959917 | 40352.7 |
| hypothetical protein | APR52_18295 | Not Available | Negative | 3959922 - 3960533 | 21957.3 |
| anti-sigm factor, chrr | APR52_18300 | Not Available | Negative | 3960673 - 3961077 | 15125.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
