Variovorax paradoxus strain H061

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax paradoxus strain H061 is a Gram-negative bacterium characterized as a rod-shaped organism. This strain is notable for its aerobic oxygen requirement, indicating that it thrives in environments where oxygen is present. Variovorax paradoxus strain H061 has been isolated from specific habitats, including mine spoil and soil, which suggests its adaptability to diverse ecological niches. The strain contains a single replicon, which is significant for its genetic stability and replication processes. Its genetic information can be accessed through the accession number LKTU00000000.1, providing a reference point for further studies and comparisons within the broader context of microbiological research. Ecologically, the presence of Variovorax paradoxus strain H061 in mine spoil and soil indicates its potential role in biogeochemical processes, such as nutrient cycling and the degradation of organic matter. This capacity may have implications for soil health and the rehabilitation of disturbed environments, highlighting the importance of this strain in ecological restoration efforts. Overall, Variovorax paradoxus strain H061 exemplifies the diversity of microbial life in specific habitats and underscores the significance of bacteria in maintaining ecological balance.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax paradoxus
Strainstrain H061

Profile

Physiology
Gram staining propertiesNegative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatmine spoil; soil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax paradoxus strain H061 H061_contig000197, whole genome

Gene Summary

Adenine Count

1486103 bp

Thymine Count

1481906 bp

Guanine Count

3332923 bp

Cytosine Count

3325138 bp

Genome Length

9626070 bp

Protein-coding Genes

8481 genes

Non-Coding Genes

143 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
conjugal transfer protein trbgAPR52_15125Not AvailablePositive3277727 - 327872535682.9
conjugal transfer protein trbiAPR52_15130P55406Positive3278728 - 328001144377.7
hypothetical proteinAPR52_15135Not AvailablePositive3280008 - 32802538596.54
hypothetical proteinAPR52_15140Not AvailablePositive3280449 - 32806286501.85
Trna-lysNot AvailableNot AvailablePositive3280780 - 3280855Not Available
short-chain dehydrogenaseAPR52_15150Q3T0R4Positive3281012 - 328171624132.0
Trna-alaNot AvailableNot AvailablePositive3281775 - 3281850Not Available
esteraseAPR52_15160A0A0G3FWY4Positive3281947 - 328281631751.0
gmp reductaseAPR52_15165C5CT60Negative3282821 - 328379835382.7
dna helicase iiAPR52_15170P03018Positive3284018 - 328643589564.2

Displaying genes 3051 – 3060 of 8624 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

510 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000234(3R)-hydroxybutanoate dimerC8H13O5Chemical structure of (3R)-hydroxybutanoate dimerNot available
Average189.188Da
Monoisotopic189.0768471Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002634-(hydroxymethyl)benzenesulfonateC7H7O4SChemical structure of 4-(hydroxymethyl)benzenesulfonateNot available
Average187.19Da
Monoisotopic187.007053459Da

Displaying 1–10 of 510 metabolites

Health Effects

No health effects information available for this bacterium.