Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain H061 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1486103 bp
Thymine Count
1481906 bp
Guanine Count
3332923 bp
Cytosine Count
3325138 bp
Genome Length
9626070 bp
Protein-coding Genes
8481 genes
Non-Coding Genes
143 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-hydroxy-3-methylglutaryl-coa lyase | APR52_13665 | Not Available | Positive | 2990379 - 2991347 | 34053.0 |
| coa-transferase | APR52_13670 | Not Available | Positive | 2991344 - 2992546 | 43101.1 |
| abc transporter substrate-binding protein | APR52_13675 | Not Available | Positive | 2992589 - 2993575 | 34061.5 |
| hypothetical protein | APR52_13680 | Q55EF8 | Negative | 2993604 - 2994740 | 41071.1 |
| multidrug transporter cfla | APR52_13685 | P45123 | Negative | 2994793 - 2996028 | 44576.3 |
| rna polymerase subunit sigma | APR52_13690 | P52325 | Negative | 2996137 - 2998509 | 87371.4 |
| dna primase | APR52_13695 | P57028 | Negative | 2998819 - 3000801 | 72787.3 |
| ribonuclease r | APR52_13700 | Q0ABB2 | Positive | 3000888 - 3001835 | 34352.9 |
| 3-hydroxy-2-methylbutyryl-coa dehydrogenase | APR52_13705 | Q99714 | Negative | 3001783 - 3002541 | 25741.3 |
| phasin (pha-granule associated protein) | APR52_13710 | P83678 | Negative | 3002697 - 3003251 | 18912.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
