Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain H061 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1486103 bp
Thymine Count
1481906 bp
Guanine Count
3332923 bp
Cytosine Count
3325138 bp
Genome Length
9626070 bp
Protein-coding Genes
8481 genes
Non-Coding Genes
143 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fad/nad(p)-binding oxidoreductase | APR52_12395 | Q59160 | Positive | 2715381 - 2716790 | 49291.7 |
| fad-dependent oxidoreductase | APR52_12400 | Q92XP5 | Positive | 2716787 - 2717968 | 41739.9 |
| spermidine/putrescine abc transporter substrate-binding protein | APR52_12405 | Not Available | Positive | 2718033 - 2719097 | 38195.2 |
| mfs transporter | APR52_12410 | P02982 | Negative | 2719121 - 2720323 | 41846.3 |
| transcriptional regulator | APR52_12415 | P03038 | Positive | 2720414 - 2721100 | 24924.2 |
| choline dehydrogenase | APR52_12420 | Q9WWW2 | Negative | 2721108 - 2722742 | 59886.0 |
| hypothetical protein | APR52_12425 | Not Available | Negative | 2722772 - 2728396 | 202379.0 |
| lysr family transcriptional regulator | APR52_12430 | P23841 | Positive | 2728694 - 2729602 | 32424.2 |
| abc transporter permease | APR52_12435 | P73009 | Positive | 2729786 - 2730958 | 41864.3 |
| abc transporter atp-binding protein | APR52_12440 | Q8Y0X3 | Positive | 2730955 - 2731809 | 30511.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
