Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain H061 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1486103 bp
Thymine Count
1481906 bp
Guanine Count
3332923 bp
Cytosine Count
3325138 bp
Genome Length
9626070 bp
Protein-coding Genes
8481 genes
Non-Coding Genes
143 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-oxo-hepta-3-ene-1,7-dioate hydratase | APR52_11100 | P42270 | Negative | 2417566 - 2418369 | 29219.9 |
| 5-carboxymethyl-2-hydroxymuconate isomerase | APR52_11105 | Not Available | Negative | 2418388 - 2418795 | 14955.8 |
| extradiol ring-cleavage dioxygenase | APR52_11110 | Not Available | Negative | 2418809 - 2419636 | 30191.0 |
| aromatic ring-opening dioxygenase liga | APR52_11115 | Not Available | Negative | 2419633 - 2419968 | 12254.7 |
| laci family transcriptional regulator | APR52_11120 | Not Available | Negative | 2419971 - 2420939 | 33740.0 |
| 2-hydroxymuconic semialdehyde dehydrogenase | APR52_11125 | P42269 | Negative | 2420942 - 2422408 | 52390.7 |
| abc transporter substrate-binding protein | APR52_11130 | Not Available | Negative | 2422422 - 2423405 | 34290.6 |
| 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase | APR52_11135 | Not Available | Negative | 2423482 - 2424234 | 27764.2 |
| fumarylacetoacetate hydrolase | APR52_11140 | Q9RPU5 | Negative | 2424231 - 2424887 | 22928.6 |
| marr family transcriptional regulator | APR52_11145 | P62573 | Negative | 2424884 - 2425315 | 16247.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
