Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain H061 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1486103 bp
Thymine Count
1481906 bp
Guanine Count
3332923 bp
Cytosine Count
3325138 bp
Genome Length
9626070 bp
Protein-coding Genes
8481 genes
Non-Coding Genes
143 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | APR52_10640 | P40401 | Positive | 2311397 - 2312170 | 27799.8 |
| sulfonate abc transporter atp-binding protein | APR52_10645 | Not Available | Positive | 2312176 - 2312964 | 29267.3 |
| histidine utilization repressor | APR52_10650 | Not Available | Positive | 2312970 - 2313749 | 28809.3 |
| histidine ammonia-lyase | APR52_10655 | A1TRE4 | Positive | 2313814 - 2315379 | 53649.9 |
| urocanate hydratase | APR52_10660 | Q8XW28 | Positive | 2315433 - 2317166 | 62915.9 |
| hutd | APR52_10665 | P24696 | Positive | 2317169 - 2317750 | 20325.0 |
| imidazolonepropionase | APR52_10670 | Q12EQ4 | Positive | 2317776 - 2319011 | 43011.7 |
| n-formimino-l-glutamate deiminase | APR52_10675 | Q9HU77 | Positive | 2319008 - 2320390 | 49317.4 |
| n-formylglutamate deformylase | APR52_10680 | O31201 | Positive | 2320404 - 2321219 | 29300.8 |
| fad-linked oxidase | APR52_10685 | P0DV35 | Positive | 2321227 - 2322615 | 48889.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
