Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain H061 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1486103 bp
Thymine Count
1481906 bp
Guanine Count
3332923 bp
Cytosine Count
3325138 bp
Genome Length
9626070 bp
Protein-coding Genes
8481 genes
Non-Coding Genes
143 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysr family transcriptional regulator | APR52_09770 | P30864 | Negative | 2111281 - 2112075 | 28563.1 |
| lysr family transcriptional regulator | APR52_09780 | Not Available | Positive | 2113130 - 2114017 | 31897.3 |
| 3-isopropylmalate dehydratase | APR52_09785 | A4X4C8 | Positive | 2114112 - 2116115 | 70780.3 |
| abc transporter substrate-binding protein | APR52_09790 | Not Available | Positive | 2116154 - 2117137 | 33257.6 |
| hypothetical protein | APR52_09795 | Q5Z3P5 | Positive | 2117141 - 2117626 | 16569.0 |
| diguanylate cyclase | APR52_09800 | Not Available | Positive | 2117742 - 2119766 | 73655.7 |
| hypothetical protein | APR52_09805 | Not Available | Negative | 2119744 - 2120706 | 35841.2 |
| urocanate hydratase | APR52_09810 | Q89GV4 | Positive | 2120922 - 2122592 | 60828.6 |
| hypothetical protein | APR52_09815 | Not Available | Positive | 2122661 - 2123566 | 32022.8 |
| abc transporter permease | APR52_09820 | Q9ZDG1 | Positive | 2123577 - 2124470 | 30132.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
