Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain H061 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1486103 bp
Thymine Count
1481906 bp
Guanine Count
3332923 bp
Cytosine Count
3325138 bp
Genome Length
9626070 bp
Protein-coding Genes
8481 genes
Non-Coding Genes
143 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| polyamine abc transporter permease | APR52_08075 | Not Available | Positive | 1761259 - 1762089 | 29521.8 |
| branched-chain amino acid transferase | APR52_08080 | O29329 | Positive | 1762086 - 1763021 | 34502.3 |
| short-chain dehydrogenase | APR52_08085 | Q5TJF5 | Positive | 1763018 - 1763770 | 25258.3 |
| acetylpolyamine aminohydrolase | APR52_08090 | Not Available | Positive | 1763803 - 1764840 | 37265.1 |
| spermidine/putrescine abc transporter substrate-binding protein | APR52_08095 | Q9I6R6 | Positive | 1764886 - 1765929 | 38149.9 |
| acetylpolyamine aminohydrolase | APR52_08100 | Q3JUN4 | Positive | 1765962 - 1766984 | 36629.2 |
| hypothetical protein | APR52_08105 | Not Available | Negative | 1766998 - 1767693 | 25976.2 |
| hypothetical protein | APR52_08110 | Not Available | Negative | 1767703 - 1768791 | 39424.9 |
| aminotransferase | APR52_08115 | Q7XN11 | Negative | 1768788 - 1770218 | 51271.4 |
| hypothetical protein | APR52_08120 | Not Available | Negative | 1770532 - 1770888 | 13529.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
