Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain H061 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1486103 bp
Thymine Count
1481906 bp
Guanine Count
3332923 bp
Cytosine Count
3325138 bp
Genome Length
9626070 bp
Protein-coding Genes
8481 genes
Non-Coding Genes
143 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| penicillin-binding protein | APR52_06995 | Not Available | Negative | 1527260 - 1529644 | 86734.4 |
| beta-hexosaminidase | APR52_07000 | C4LEY6 | Negative | 1529658 - 1530974 | 47559.4 |
| hypothetical protein | APR52_07005 | P08369 | Negative | 1530971 - 1532419 | 51969.4 |
| trypsin | APR52_07010 | E9PYK3 | Positive | 1532607 - 1534679 | 75005.8 |
| exosortase | APR52_07015 | Not Available | Positive | 1534696 - 1535631 | 32679.8 |
| hypothetical protein | APR52_07020 | Not Available | Positive | 1535636 - 1536202 | 21279.6 |
| glycosyl transferase | APR52_07025 | Q3SFZ8 | Positive | 1536211 - 1537488 | 45953.5 |
| gcn5 family acetyltransferase | APR52_07030 | Not Available | Positive | 1537485 - 1538231 | 26749.8 |
| hypothetical protein | APR52_07035 | Not Available | Negative | 1538242 - 1538946 | 24641.6 |
| hypothetical protein | APR52_07045 | Not Available | Positive | 1540544 - 1541107 | 20103.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
