Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain H061 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1486103 bp
Thymine Count
1481906 bp
Guanine Count
3332923 bp
Cytosine Count
3325138 bp
Genome Length
9626070 bp
Protein-coding Genes
8481 genes
Non-Coding Genes
143 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sugar abc transporter atp-binding protein | APR52_05940 | Q1AXG5 | Positive | 1306834 - 1308339 | 53913.5 |
| abc transporter permease | APR52_05945 | Not Available | Positive | 1308366 - 1309382 | 33999.2 |
| phosphoglycerate mutase | APR52_05950 | Q9SCS3 | Negative | 1309392 - 1310039 | 23978.2 |
| hypothetical protein | APR52_05955 | Not Available | Negative | 1310103 - 1310744 | 23453.7 |
| trna 2-thiocytidine biosynthesis protein ttca | APR52_05960 | C5CNK9 | Negative | 1310791 - 1311735 | 35163.6 |
| dihydroneopterin aldolase | APR52_05965 | Not Available | Negative | 1311794 - 1312171 | 14016.2 |
| short-chain dehydrogenase | APR52_05970 | Not Available | Negative | 1312215 - 1313015 | 28072.5 |
| hypothetical protein | APR52_05975 | Not Available | Positive | 1313037 - 1314170 | 40643.4 |
| aminopeptidase | APR52_05980 | Not Available | Negative | 1314793 - 1315614 | 28997.8 |
| aminopeptidase | APR52_05985 | A0MTQ2 | Negative | 1315636 - 1316685 | 36047.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
