Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain H061 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1486103 bp
Thymine Count
1481906 bp
Guanine Count
3332923 bp
Cytosine Count
3325138 bp
Genome Length
9626070 bp
Protein-coding Genes
8481 genes
Non-Coding Genes
143 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| udp-diphospho-muramoylpentapeptide beta-n-acetylglucosaminyltransferase | APR52_05640 | Q12EL5 | Positive | 1238363 - 1239427 | 37699.0 |
| udp-n-acetylmuramate--alanine ligase | APR52_05645 | C5CNF5 | Positive | 1239424 - 1240893 | 50878.1 |
| d-alanine--d-alanine ligase | APR52_05650 | A2SCY7 | Positive | 1240890 - 1241861 | 34859.8 |
| cell division protein ftsq | APR52_05655 | Q63QK0 | Positive | 1241864 - 1242655 | 28965.8 |
| cell division protein ftsa | APR52_05660 | P47203 | Positive | 1242677 - 1243906 | 43588.2 |
| cell division protein ftsz | APR52_05665 | P0A9A8 | Positive | 1244076 - 1245281 | 41717.8 |
| udp-3-o-[3-hydroxymyristoyl] n-acetylglucosamine deacetylase | APR52_05670 | C5CNG0 | Positive | 1245532 - 1246455 | 33839.4 |
| hypothetical protein | APR52_05675 | Not Available | Positive | 1246898 - 1247947 | 38769.2 |
| crossover junction endodeoxyribonuclease ruvc | APR52_05680 | C5CNG5 | Negative | 1247961 - 1248509 | 19219.2 |
| phosphatidate cytidylyltransferase | APR52_05685 | Not Available | Negative | 1248517 - 1249506 | 36548.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
