Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain H061 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1486103 bp
Thymine Count
1481906 bp
Guanine Count
3332923 bp
Cytosine Count
3325138 bp
Genome Length
9626070 bp
Protein-coding Genes
8481 genes
Non-Coding Genes
143 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| diaminopimelate epimerase | APR52_05540 | C5CND4 | Positive | 1214368 - 1215243 | 31462.5 |
| hypothetical protein | APR52_05545 | Not Available | Positive | 1215240 - 1215941 | 25822.6 |
| hypothetical protein | APR52_05550 | Not Available | Positive | 1216013 - 1216597 | 21073.3 |
| recombinase xerc | APR52_05555 | Q8Y3C8 | Positive | 1216581 - 1217627 | 38040.3 |
| 23s rrna methyltransferase | APR52_05560 | Q12JE5 | Positive | 1217624 - 1218847 | 44182.7 |
| cobalamin biosynthesis protein cobw | APR52_05565 | P24203 | Positive | 1218969 - 1220021 | 39552.1 |
| hypothetical protein | APR52_05570 | Not Available | Negative | 1220197 - 1221678 | 52346.2 |
| conjugal transfer protein trar | APR52_05575 | P0CAU3 | Positive | 1222464 - 1223042 | 21549.8 |
| hypothetical protein | APR52_05580 | Not Available | Positive | 1223089 - 1224750 | 59526.2 |
| atp-dependent protease subunit hslv | APR52_05585 | C5CNE3 | Positive | 1224809 - 1225354 | 19489.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
