Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain H061 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1486103 bp
Thymine Count
1481906 bp
Guanine Count
3332923 bp
Cytosine Count
3325138 bp
Genome Length
9626070 bp
Protein-coding Genes
8481 genes
Non-Coding Genes
143 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter substrate-binding protein | APR52_05140 | Not Available | Negative | 1131247 - 1132245 | 34918.3 |
| coa-transferase | APR52_05145 | Not Available | Negative | 1132281 - 1133489 | 43259.1 |
| enoyl-coa hydratase | APR52_05150 | Not Available | Negative | 1133563 - 1134372 | 28265.8 |
| pimeloyl-coa dehydrogenase small subunit | APR52_05155 | P9WQG2 | Negative | 1134369 - 1135511 | 40386.2 |
| pimeloyl-coa dehydrogenase large subunit | APR52_05160 | Not Available | Negative | 1135524 - 1136732 | 44187.0 |
| acetyl-coa acetyltransferase | APR52_05165 | Not Available | Negative | 1136743 - 1137933 | 41988.4 |
| 3-hydroxyacyl-coa dehydrogenase | APR52_05170 | Not Available | Negative | 1137965 - 1140100 | 75867.6 |
| lysr family transcriptional regulator | APR52_05175 | P37641 | Positive | 1140245 - 1141147 | 33668.9 |
| hypothetical protein | APR52_05180 | O86029 | Negative | 1141131 - 1141859 | 26998.8 |
| 3-isopropylmalate dehydratase | APR52_05185 | Q89X98 | Positive | 1141973 - 1143379 | 49407.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
