Pseudomonas putida strain HB13667

Gram-negativeRodMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas putida strain HB13667 is a Gram-negative, rod-shaped bacterium primarily found in soil and wastewater environments. This strain exhibits a heterotrophic lifestyle, allowing it to utilize organic compounds as its energy source. It is categorized as a facultative anaerobe, indicating that it can grow in both the presence and absence of oxygen. The bacterium is motile, possessing flagella, which facilitates its movement in various environments. Pseudomonas putida strain HB13667 has a mesophilic temperature range, thriving at moderate temperatures typically found in its natural habitats. The organism has a single replicon and is characterized by a double-membrane structure common to Gram-negative bacteria. In terms of ecological interactions, Pseudomonas putida strain HB13667 is free-living and interacts with a diverse array of hosts, including plants such as Triticum aestivum (wheat), Solanum lycopersicum (tomato), and Oryza sativa (rice), as well as various algae and even animals like Struthio camelus (ostrich). Despite its ecological versatility, Pseudomonas putida strain HB13667 has the potential to be associated with nosocomial infections in humans, indicating a pathogenic relationship with animals. This duality of being both beneficial in environmental contexts and potentially harmful in clinical settings highlights the importance of understanding the roles of such microorganisms in both ecological and health-related frameworks.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas putida
Strainstrain HB13667

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas putida strain HB13667
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatSoil - Wastewater
Biotic relationshipFree living
Host(s)Homo sapiens, Viridiplantae, Triticum aestivum
Cell arrangementSingles
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityAnimal

Genome Summary

Pseudomonas putida strain HB13667 contig00223, whole genome

Gene Summary

Adenine Count

1184198 bp

Thymine Count

1191452 bp

Guanine Count

1977292 bp

Cytosine Count

1972560 bp

Genome Length

6325504 bp

Protein-coding Genes

5543 genes

Non-Coding Genes

212 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pilus assembly proteinHB13667_13310Q9HVI1Negative2824692 - 282505414248.1
carbon starvation protein aHB13667_13315P39396Positive2825233 - 282729973696.0
hypothetical proteinHB13667_13320P0AAT0Positive2827313 - 28275107593.12
sodium transporterHB13667_13325O34524Positive2827645 - 282861034287.6
molecular chaperoneHB13667_13330Q7MZY0Positive2828834 - 282915110798.8
glycerol acyltransferaseHB13667_13335B5XUP3Negative2829161 - 283103868289.5
mfs transporterHB13667_13340P31126Positive2831308 - 283248641783.5
histidine kinaseHB13667_13345Q9KLK7Positive2832613 - 2836089127257.0
recombinase rmucHB13667_13350Q9I4U3Negative2836061 - 283754855688.8
hypothetical proteinHB13667_13355Not AvailableNegative2837666 - 283808515788.2

Displaying genes 2671 – 2680 of 5755 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

316 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000232(4S)-perillyl alcoholC10H16OChemical structure of (4S)-perillyl alcoholNot available
Average152.237Da
Monoisotopic152.1201151Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da

Displaying 1–10 of 316 metabolites

Health Effects

Health ConditionRelationReference
Nosocomial infectionsCausesPMC11585281
Nosocomial infectionsCausesPMC13243026

Displaying health effects 1 – 2 of 2 in total