Pseudomonas putida strain HB13667

Gram-negativeRodMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas putida strain HB13667 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is a nonsporulating, facultative heterotroph, capable of utilizing various organic compounds as energy sources. It predominantly inhab soil and wastewater environments, which may reflect its adaptability to diverse ecological niches. The facultative anaerobic nature of Pseudomonas putida strain HB13667 suggests that it can thrive in both aerobic and microaerophilic conditions, providing it with a competitive advantage in environments where oxygen levels fluctuate. Its ability to metabolize a range of organic substrates indicates its potential role in bioremediation processes, particularly in contaminated soils and wastewater treatment systems. Notably, the presence of this strain in wastewater habitats highlights its significance in the degradation of pollutants, thereby contributing to the biogeochemical cycling of nutrients in these ecosystems. The strain's inherent metabolic versatility may also enable it to participate in complex microbial communities, facilitating interactions that enhance the overall ecological function of the environments it inhabits.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas putida
Strainstrain HB13667

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas putida strain HB13667
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatSoil - Wastewater
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityAnimal

Genome Summary

Pseudomonas putida strain HB13667


Gene Summary

Adenine Count

1184198 bp

Thymine Count

1191452 bp

Guanine Count

1977292 bp

Cytosine Count

1972560 bp

Genome Length

6325504 bp

Protein-coding Genes

5543 genes

Non-Coding Genes

212 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+1270820 - 1270835Not Available
IntegraseHB13667_05840Not Available+1271001 - 127220945827.9
Transcriptional regulatorHB13667_05845Not Available-1272210 - 12724227840.58
hypothetical proteinHB13667_05850Not Available-1272432 - 12726447594.24
hypothetical proteinHB13667_05855Not Available-1272641 - 127419757646.5
hypothetical proteinHB13667_05860Not Available-1274348 - 127495022565.9
hypothetical proteinHB13667_05865Not Available-1274947 - 127526411489.9
Gp20 proteinHB13667_05870Not Available-1275275 - 127642943980.7
hypothetical proteinHB13667_05875Not Available-1276633 - 127698913171.3
Hypothetical proteinHB13667_05880Not Available-1277042 - 127765922452.9

Displaying genes 1 – 10 of 5755 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

316 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000232(4S)-perillyl alcoholC10H16OChemical structure of (4S)-perillyl alcoholNot available
Average152.237Da
Monoisotopic152.1201151Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da

Displaying 1–10 of 316 metabolites