Pseudomonas sp. TTU2014-105ASC

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. TTU2014-105ASC is characterized by a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability and efficiency in various environments. The organism is cataloged under the accession number LKKM00000000.1, which provides a reference for genetic and genomic studies. As part of the Pseudomonas genus, TTU2014-105ASC likely exhibits traits associated with this group, such as metabolic versatility and the ability to thrive in diverse habitats. Pseudomonas species are known for their roles in bioremediation, where they can degrade environmental pollutants, as well as their interactions with plant roots, potentially promoting growth or providing protection against pathogens. The presence of a single replicon may suggest a lack of plasmids, which can influence the organism's genetic stability and evolutionary dynamics. This trait could affect its ecological interactions, possibly making it more resilient to certain stresses while limiting its capacity to acquire additional traits through horizontal gene transfer. In summary, Pseudomonas sp. TTU2014-105ASC, with its single replicon and known accession, embodies traits typical of the Pseudomonas genus that suggest ecological versatility. Understanding its genetic makeup can provide insights into its potential applications in environmental management and agricultural practices.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. TTU2014-105ASC
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. TTU2014-105ASC
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. TTU2014-105ASC scaffold_9, whole genome shotgun

Gene Summary

Adenine Count

854897 bp

Thymine Count

874452 bp

Guanine Count

1412407 bp

Cytosine Count

1379081 bp

Genome Length

4520837 bp

Protein-coding Genes

4049 genes

Non-Coding Genes

76 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
transporterAO741_00175Not AvailableNegative34500 - 3565142726.9
spermidine/putrescine abc transporter substrate-binding proteinAO741_00180Not AvailableNegative35803 - 3688839399.6
spermidine/putrescine abc transporter substrate-binding proteinAO741_00185Not AvailableNegative37167 - 3826440074.6
aminotransferaseAO741_00190Not AvailableNegative38484 - 3984249711.8
glutamine synthetaseAO741_00195Not AvailableNegative39929 - 4128751417.6
gamma-glutamyl-gamma-aminobutyrate hydrolaseAO741_00200Not AvailableNegative41330 - 4207627029.3
gamma-glutamylputrescine synthetaseAO741_00205Not AvailablePositive42317 - 4369051053.6
tetr family transcriptional regulatorAO741_00210Not AvailablePositive43750 - 4440023980.8
n-carbamoylputrescine amidaseAO741_00215Not AvailablePositive44533 - 4541432847.8
agmatine deiminaseAO741_00220Not AvailablePositive45481 - 4658740773.0

Displaying genes 61 – 70 of 4125 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.