Pseudomonas marginalis ICMP 9505

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas marginalis ICMP 9505 is a Gram-negative bacterium characterized by its rod shape and aerobic metabolism. This organism thrives at an optimal temperature of 16°C and exhibits psychrotolerant capabilities, allowing it to grow in a temperature range suitable for cooler environments. The genome of Pseudomonas marginalis ICMP 9505 is represented by a single replicon, with the genomic data accessible under the accession number LKGY00000000.1. This genetic information may provide insights into its metabolic pathways and ecological roles. Given its psychrotolerant nature, Pseudomonas marginalis ICMP 9505 could be significant in biogeochemical processes in cold environments, such as polar regions or deep-sea ecosystems. Its ability to thrive in lower temperatures suggests a potential role in nutrient cycling and organic matter decomposition in these habitats, contributing to the overall microbial diversity and ecological balance.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas marginalis
StrainICMP 9505

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas marginalis ICMP 9505
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature16
Temperature rangepsychrotolerant
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas marginalis ICMP 9505 scaffold99, whole genome shotgun

Gene Summary

Adenine Count

1207296 bp

Thymine Count

1175274 bp

Guanine Count

1728059 bp

Cytosine Count

1782784 bp

Genome Length

5893550 bp

Protein-coding Genes

5014 genes

Non-Coding Genes

157 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
protein-l-isoaspartate o-methyltransferaseAO391_00575Not AvailableNegative1773777 - 177445425064.5
stationary phase survival protein sureAO391_00580Not AvailableNegative1774454 - 177520326338.2
pseudouridine synthaseAO391_00585Not AvailableNegative1775191 - 177624938408.7
2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthaseAO391_00590Not AvailableNegative1776246 - 177671916767.3
s-formylglutathione hydrolaseAO391_00595Not AvailableNegative1776774 - 177761931345.2
s-(hydroxymethyl)glutathione dehydrogenaseAO391_00600Not AvailableNegative1777708 - 177882039102.4
lysr family transcriptional regulatorAO391_00605Not AvailablePositive1778930 - 177982633883.8
2-c-methyl-d-erythritol 4-phosphate cytidylyltransferaseAO391_00610Not AvailableNegative1780289 - 178099625737.7
cell division protein ftsbAO391_00615Not AvailableNegative1780993 - 178127110603.8
enolaseAO391_00620Not AvailableNegative1781455 - 178274445535.0

Displaying genes 1541 – 1550 of 5171 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Export CSV
Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.