Pseudomonas marginalis ICMP 11289

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas marginalis ICMP 11289 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology. This organism thrives optimally at a temperature of 16°C, indicating its adaptation to cooler environments, and it is classified as psychrotolerant, meaning it can grow at low temperatures, extending the range of conditions under which it can survive and reproduce. The genomic structure of Pseudomonas marginalis ICMP 11289 is defined by the presence of a single replicon, which is indicative of its genetic organization. The complete genomic data for this strain is accessible under the accession number LKGX00000000.1, providing a resource for further research into its genetic makeup and potential applications. Ecologically, the psychrotolerant nature of Pseudomonas marginalis ICMP 11289 suggests that it may play a role in decomposing organic matter in cold environments, such as polar regions or cold aquatic systems. Its ability to thrive at lower temperatures could facilitate nutrient cycling in such ecosystems, making it a significant player in the ecological dynamics of cold habitats. The bacterium's aerobic requirement highlights its dependency on oxygen, which is essential for its metabolic processes, further linking it to aerobic decomposition pathways in its natural environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas marginalis
StrainICMP 11289

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas marginalis ICMP 11289
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature16
Temperature rangepsychrotolerant
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas marginalis ICMP 11289 scaffold99, whole genome shotgun

Gene Summary

Adenine Count

1224384 bp

Thymine Count

1262509 bp

Guanine Count

1832479 bp

Cytosine Count

1774371 bp

Genome Length

6093823 bp

Protein-coding Genes

5251 genes

Non-Coding Genes

116 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
zinc metallopeptidase rsepAO390_26330Q9HXY3Positive3723641 - 372499348367.1
outer membrane protein assembly factor bamaAO390_26335B5Y1J4Positive3725068 - 372745587327.3
hypothetical proteinAO390_26340Q9HXY5Positive3727501 - 372800418900.1
udp-3-o-(3-hydroxymyristoyl) glucosamine n-acyltransferaseAO390_26345Q48F69Positive3728006 - 372906136561.9
3-hydroxyacyl-acp dehydrataseAO390_26350Q48F70Positive3729171 - 372961116677.5
udp-n-acetylglucosamine acyltransferaseAO390_26355Q4ZWR6Positive3729608 - 373038427926.4
lipid-a-disaccharide synthaseAO390_26360Q886N0Positive3730387 - 373152941678.3
ribonuclease hiiAO390_26365Q4ZWR4Positive3731541 - 373219123181.4
dna polymerase iii subunit alphaAO390_26370Q9XDH6Positive3732255 - 3735776131130.0
acetyl-coa carboxylase subunit alphaAO390_26375Q48F75Positive3735905 - 373685235024.2

Displaying genes 3361 – 3370 of 5367 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

325 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da

Displaying 1–10 of 325 metabolites

Health Effects

No health effects information available for this bacterium.