Pseudomonas marginalis ICMP 11289

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas marginalis ICMP 11289 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology. This organism thrives optimally at a temperature of 16°C, indicating its adaptation to cooler environments, and it is classified as psychrotolerant, meaning it can grow at low temperatures, extending the range of conditions under which it can survive and reproduce. The genomic structure of Pseudomonas marginalis ICMP 11289 is defined by the presence of a single replicon, which is indicative of its genetic organization. The complete genomic data for this strain is accessible under the accession number LKGX00000000.1, providing a resource for further research into its genetic makeup and potential applications. Ecologically, the psychrotolerant nature of Pseudomonas marginalis ICMP 11289 suggests that it may play a role in decomposing organic matter in cold environments, such as polar regions or cold aquatic systems. Its ability to thrive at lower temperatures could facilitate nutrient cycling in such ecosystems, making it a significant player in the ecological dynamics of cold habitats. The bacterium's aerobic requirement highlights its dependency on oxygen, which is essential for its metabolic processes, further linking it to aerobic decomposition pathways in its natural environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas marginalis
StrainICMP 11289

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas marginalis ICMP 11289
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature16
Temperature rangepsychrotolerant
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas marginalis ICMP 11289


Gene Summary

Adenine Count

1224384 bp

Thymine Count

1262509 bp

Guanine Count

1832479 bp

Cytosine Count

1774371 bp

Genome Length

6093823 bp

Protein-coding Genes

5251 genes

Non-Coding Genes

116 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Putative tail proteinAO390_02015Not AvailableNegative1528872 - 152997840109.4
Tail/dna circulation proteinAO390_02020P71389Negative1529982 - 153147551936.1
Putative tail proteinAO390_02025B0ZSH1Negative1531472 - 153375480230.9
Putative bacteriophage proteinAO390_02030Not AvailableNegative1533885 - 153418110626.8
Tail tube proteinAO390_02035Not AvailableNegative1534178 - 153452512479.0
Tail sheath proteinAO390_02040P44233Negative1534593 - 153608953361.4
hypothetical proteinAO390_02045Not AvailableNegative1536108 - 15362936760.79
Hypothetical proteinAO390_02050Not AvailableNegative1536290 - 153688021343.1
LipoproteinAO390_02055Not AvailableNegative1536967 - 153730512252.6
Chemotaxis proteinAO390_02060Not AvailableNegative1537286 - 153767514124.8

Displaying genes 11 – 20 of 5367 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

325 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da

Displaying 1–10 of 325 metabolites

Health Effects

No health effects information available for this bacterium.