Comamonas thiooxydans strain PHE2-6

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Comamonas

Description

Comamonas thiooxydans strain PHE2-6 is characterized as a rod-shaped bacterium that possesses flagella, indicating its capability for motility. This strain has been documented under the accession number LKFB00000000.1 and contains a single replicon, which is relevant for its genetic stability and replication processes. The presence of flagella suggests that C. thiooxydans strain PHE2-6 can navigate its environment, which may be beneficial for colonization and interaction with other microbial communities or substrates. This motility can enhance its ecological role, potentially allowing it to exploit various ecological niches. In terms of its biological significance, Comamonas thiooxydans is known for its ability to oxidize sulfur compounds, which plays a crucial role in the sulfur cycle. The strain's specific adaptations, such as its rod shape and flagellar motility, may facilitate its ecological interactions in environments where sulfur compounds are prevalent. Overall, the traits of Comamonas thiooxydans strain PHE2-6 highlight its potential contributions to microbial ecosystems, particularly in sulfur-rich environments, where it may participate in biogeochemical cycling and influence the dynamics of microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusComamonas
SpeciesComamonas thiooxydans
Strainstrain PHE2-6

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatactivated sludge; human gut; human intestinal tract
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Comamonas thiooxydans strain PHE2-6 contig90089, whole genome

Gene Summary

Adenine Count

1024974 bp

Thymine Count

1017257 bp

Guanine Count

1618464 bp

Cytosine Count

1645883 bp

Genome Length

5306578 bp

Protein-coding Genes

4567 genes

Non-Coding Genes

224 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
AttrNot AvailableNot AvailablePositive5022862 - 5022874Not Available
hypothetical proteinATN89_22830Not AvailableNegative5023003 - 50231886649.07
Tyrosine family integraseATN89_22835Not AvailableNegative5023237 - 502425338761.7
Gp258ATN89_24040Not AvailableNegative5261857 - 526311945954.5
Atp-dependent clp protease proteolytic subunitATN89_24045Not AvailableNegative5263296 - 526390422189.8
trigger factorATN89_24050Not AvailableNegative5264038 - 526534847721.7
Portal vertex proteinATN89_24055Not AvailableNegative5265835 - 526689639362.6
Gp41ATN89_24060Not AvailableNegative5266893 - 526863265291.5
Gp3, phage capsid scaffolding protein (gpo)ATN89_24065Not AvailablePositive5268971 - 526981331032.2
Capsid proteinATN89_24070Not AvailablePositive5269865 - 527088737300.6

Displaying genes 211 – 220 of 4791 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1 record
Metabolite IDMetabolite nameStructureCAS number
BASm0004885UDP-N-acetyl-alpha-D-mannosamineC17H25N3O17P2Chemical structure of UDP-N-acetyl-alpha-D-mannosamineNot available
Average605.34Da
Monoisotopic605.067017513Da

Displaying 1–1 of 1 metabolites

Health Effects

Health ConditionRelationReference
BacteremiaCausesPMC13579767
PeritonitisCausesPMC13579767
Wound infectionsCausesPMC13579767

Displaying health effects 1 – 3 of 3 in total