Variovorax boronicumulans strain PHE5-4

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax boronicumulans strain PHE5-4 is a rod-shaped bacterium primarily found in iron-rich wall sinter environments. This habitat is characterized by the presence of iron minerals, which can influence the metabolic processes of resident microbial communities. The strain possesses a single replicon, indicating a streamlined genomic organization that may facilitate efficient replication and adaptation to its specific ecological niche. The genome of Variovorax boronicumulans strain PHE5-4 has been cataloged under the accession number LKDZ00000000.1, providing a reference point for future studies and genomic comparisons within the Variovorax genus. The ability of Variovorax species to thrive in iron-rich environments suggests potential roles in biogeochemical cycling, particularly in iron metabolism. These bacteria could contribute to the transformation of iron compounds, influencing the availability of nutrients and the overall dynamics of microbial communities in their habitat. Understanding the characteristics and ecological functions of Variovorax boronicumulans strain PHE5-4 may provide insights into the microbial processes that govern iron-rich environments and their broader ecological implications.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax boronicumulans
Strainstrain PHE5-4

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatiron-rich wall sinter
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax boronicumulans strain PHE5-4 Contig90128, whole genome

Gene Summary

Adenine Count

1072012 bp

Thymine Count

1070008 bp

Guanine Count

2302561 bp

Cytosine Count

2323682 bp

Genome Length

6768263 bp

Protein-coding Genes

6052 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ion transporterAO062_21450Not AvailablePositive4648573 - 464950534340.8
impact family proteinAO062_21455Not AvailableNegative4649450 - 465003720481.8
methionine biosynthesis protein metwAO062_21460Not AvailableNegative4650075 - 465066221868.4
homoserine o-acetyltransferaseAO062_21465Not AvailableNegative4650659 - 465181642498.3
hypothetical proteinAO062_21470Not AvailableNegative4651944 - 465250720211.5
rna-binding proteinAO062_21475Not AvailablePositive4652963 - 465349916309.7
short-chain dehydrogenaseAO062_21480Not AvailableNegative4653609 - 465439427436.0
lps export abc transporter periplasmic protein lptcAO062_21485Not AvailableNegative4654438 - 465508823833.4
3-deoxy-d-manno-octulosonate 8-phosphate phosphataseAO062_21490Not AvailableNegative4655085 - 465563319679.7
arabinose 5-phosphate isomeraseAO062_21495Not AvailableNegative4655633 - 465663434704.4

Displaying genes 4201 – 4210 of 6052 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.