Pseudomonas syringae pv. actinidiae ICMP 19497

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas syringae pv. actinidiae ICMP 19497 is a gram-negative, rod-shaped bacterium that exhibits several notable traits. This organism is a heterotroph, relying on organic compounds as its energy source, and it requires oxygen for growth, classifying it as an aerobe. The bacterium is characterized by its mobility, which is facilitated by the presence of flagella. With a mesophilic temperature range, P. syringae pv. actinidiae ICMP 19497 thrives in moderate environmental conditions. It has a single replicon and is enclosed by two membranes, consistent with its classification within the Pseudomonas genus. The organism exists as a free-living entity, indicating its ability to survive independently in various habitats. This bacterium is particularly significant in agricultural contexts, especially concerning its role as a pathogen in kiwifruit plants, where it can impact crop health and yield. Understanding the ecological interactions and environmental adaptations of P. syringae pv. actinidiae can provide insights into its biotic relationships and influence on plant health. As it occupies multiple habitats and possesses versatile metabolic capabilities, this organism exemplifies the complex dynamics of microbial life in ecosystems, highlighting the importance of microbial diversity in agricultural settings.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas syringae
Strainpv. actinidiae ICMP 19497

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas syringae pv. actinidiae ICMP 19497
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Pseudomonas syringae pv. actinidiae ICMP 19497 scaffold99, whole

Gene Summary

Adenine Count

1331260 bp

Thymine Count

1281092 bp

Guanine Count

1817059 bp

Cytosine Count

1886159 bp

Genome Length

6315702 bp

Protein-coding Genes

5315 genes

Non-Coding Genes

135 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
helicaseAO250_18290Q12873Positive1840274 - 184222672978.2
hypothetical proteinAO250_18295Not AvailablePositive1842326 - 18425748917.31
pilus assembly protein pillAO250_18300Not AvailablePositive1842938 - 184391234428.8
secretinAO250_18305Not AvailablePositive1843909 - 184562159394.9
pilus assembly protein piloAO250_18310Not AvailablePositive1845623 - 184698149459.4
pilus assembly protein pilxAO250_18315Not AvailablePositive1846971 - 184757320832.9
pilus assembly protein pilqAO250_18320P37094Positive1847570 - 184920159624.9
pilus assembly proteinAO250_18325Not AvailablePositive1849191 - 185028240112.4
pilus assembly protein pilxAO250_18330Not AvailablePositive1850321 - 185084517904.2
twitching motility protein piltAO250_18335P25953Positive1850848 - 185178033577.2

Displaying genes 1631 – 1640 of 5450 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

324 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da

Displaying 1–10 of 324 metabolites

Health Effects

No health effects information available for this bacterium.