Algoriphagus marincola HL-49

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Cyclobacteriaceae

Genus

Algoriphagus

Description

Algoriphagus marincola HL-49 is a Gram-negative, rod-shaped bacterium. It is characterized by having a single replicon, which indicates that it possesses a streamlined genome structure. The strain is cataloged under the accession number LJXT00000000.1, which provides a reference for its genetic information. As a member of the Algoriphagus genus, this bacterium is likely adapted to marine environments, where it may play a role in the decomposition of organic matter. The Gram-negative nature of Algoriphagus marincola HL-49 suggests that it has a complex cell wall structure, which may contribute to its survival in various ecological niches, including those with fluctuating salinity and nutrient availability. The ecological insights derived from the traits of Algoriphagus marincola HL-49 highlight its potential importance in marine microbiomes. Its role in organic matter degradation could facilitate nutrient cycling in marine ecosystems, supporting the growth of other microorganisms and influencing overall ecosystem health. Understanding the specific functions and interactions of such bacterial species can provide further insight into the dynamics of marine environments and the contributions of microbial communities to biogeochemical processes.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyCyclobacteriaceae
GenusAlgoriphagus
SpeciesAlgoriphagus marincola
StrainHL-49

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Algoriphagus marincola HL-49 ITZ_scaf_1928, whole genome

Gene Summary

Adenine Count

1101299 bp

Thymine Count

1097230 bp

Guanine Count

800946 bp

Cytosine Count

801107 bp

Genome Length

3800660 bp

Protein-coding Genes

3514 genes

Non-Coding Genes

37 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
udp-n-acetylglucosamine 1-carboxyvinyltransferase muraHLUCCX10_10185Q5L9P3Positive2171738 - 217304247904.7
protein of unknown function duf563HLUCCX10_10190Not AvailablePositive2173053 - 217405438932.0
phosphogluconate dehydratase eddHLUCCX10_10195Q92RP0Positive2174133 - 217585162462.5
3-oxoacyl-[acyl-carrier-protein] reductase fabgHLUCCX10_10200A0A2H3D8Y2Positive2175902 - 217666326931.2
acetoacetate decarboxylase (adc)HLUCCX10_10205Not AvailablePositive2176670 - 217732925307.6
short-chain dehydrogenase/reductaseHLUCCX10_10210Not AvailablePositive2177322 - 217810429407.8
putative lipoproteinHLUCCX10_10215Not AvailablePositive2178130 - 217878325197.1
formate--tetrahydrofolate ligaseHLUCCX10_10220B8D067Negative2178994 - 218066160137.1
Trna-argNot AvailableNot AvailablePositive2180809 - 2180880Not Available
small subunit ribosomal protein s16 rpspHLUCCX10_10230Q11YV6Positive2181025 - 218159420524.2

Displaying genes 2011 – 2020 of 3551 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

206 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000122echinenoneC40H54OChemical structure of echinenoneNot available
Average550.871Da
Monoisotopic550.417466359Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000275keto-D-sorboseC6H12O6Chemical structure of keto-D-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000315acetylpyruvateC5H6O4Chemical structure of acetylpyruvateNot available
Average130.099Da
Monoisotopic130.0266087Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 206 metabolites

Health Effects

No health effects information available for this bacterium.