Pseudomonas fluorescens strain S613

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas fluorescens strain S613 is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolism and heterotrophic energy source. This strain exhibits mobility due to the presence of flagella and typically exists as single cells rather than in clusters. It thrives optimally at 25°C and falls within a mesophilic temperature range. This bacterium has a free-living biotic relationship and is known to inhabit multiple environments, showcasing its versatility. It can interact with various hosts, including Homo sapiens, Metazoa, and several plant species such as Triticum aestivum (wheat), Solanum tuberosum (potato), and Solanum lycopersicum (tomato). Other hosts include amphibians and a variety of other plants, indicating a broad ecological niche. Pseudomonas fluorescens strain S613 is noted for its potential health effects, primarily related to bacterial infections in animals, highlighting its pathogenicity. The presence of this strain in diverse ecosystems suggests that it may play a significant role in microbial communities, influencing interactions within both animal and plant hosts. Its ability to thrive across different habitats and its interactions with multiple organisms underscore its ecological importance and potential implications for health and disease dynamics in both agricultural and natural environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas fluorescens
Strainstrain S613

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas fluorescens strain S613
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Homo sapiens, Metazoa, Viridiplantae
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityAnimal

Genome Summary

Pseudomonas fluorescens strain S613


Gene Summary

Adenine Count

1362493 bp

Thymine Count

1360473 bp

Guanine Count

2001009 bp

Cytosine Count

2009929 bp

Genome Length

6733904 bp

Protein-coding Genes

6195 genes

Non-Coding Genes

75 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ld-carboxypeptidase family proteinAN403_490O34851Negative6287557 - 628850734260.7
lipoyl synthaseAN403_491Q3K6A4Negative6288681 - 628970338277.5
lipoyl(octanoyl) transferaseAN403_492Q3K6A3Negative6289705 - 629035223428.2
hypothetical proteinAN403_493Q3K6A2Negative6290352 - 629062710308.3
d-alanyl-d-alanine carboxypeptidase family proteinAN403_494P08506Negative6290712 - 629186942140.9
rare lipoa family proteinAN403_495A0A0H2ZFV1Negative6292053 - 629306035903.8
lytic murein transglycosylase bAN403_496P41052Negative6293060 - 629407037808.8
rod shape-determining protein rodaAN403_497P0ABG8Negative6294088 - 629523041641.6
penicillin-binding protein 2AN403_498Not AvailableNegative6295223 - 629711870325.4
rrna large subunit m3psi methyltransferase rlmhAN403_499Q4K5G2Negative6297129 - 629759617707.5

Displaying genes 5831 – 5840 of 6270 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

412 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000232(4S)-perillyl alcoholC10H16OChemical structure of (4S)-perillyl alcoholNot available
Average152.237Da
Monoisotopic152.1201151Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da

Displaying 1–10 of 412 metabolites

Health Effects

Health ConditionRelationReference
Bacterial infectionsCausesPMC7578172

Displaying health effects 1 – 1 of 1 in total