Pseudomonas fluorescens strain S613

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas fluorescens strain S613 is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolism and heterotrophic energy source. This strain exhibits mobility due to the presence of flagella and typically exists as single cells rather than in clusters. It thrives optimally at 25°C and falls within a mesophilic temperature range. This bacterium has a free-living biotic relationship and is known to inhabit multiple environments, showcasing its versatility. It can interact with various hosts, including Homo sapiens, Metazoa, and several plant species such as Triticum aestivum (wheat), Solanum tuberosum (potato), and Solanum lycopersicum (tomato). Other hosts include amphibians and a variety of other plants, indicating a broad ecological niche. Pseudomonas fluorescens strain S613 is noted for its potential health effects, primarily related to bacterial infections in animals, highlighting its pathogenicity. The presence of this strain in diverse ecosystems suggests that it may play a significant role in microbial communities, influencing interactions within both animal and plant hosts. Its ability to thrive across different habitats and its interactions with multiple organisms underscore its ecological importance and potential implications for health and disease dynamics in both agricultural and natural environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas fluorescens
Strainstrain S613

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas fluorescens strain S613
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Homo sapiens, Metazoa, Viridiplantae
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityAnimal

Genome Summary

Pseudomonas fluorescens strain S613


Gene Summary

Adenine Count

1362493 bp

Thymine Count

1360473 bp

Guanine Count

2001009 bp

Cytosine Count

2009929 bp

Genome Length

6733904 bp

Protein-coding Genes

6195 genes

Non-Coding Genes

75 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phage integrase family proteinAN403_2649P76542Negative3732957 - 373427649960.9
Trna-leuNot AvailableNot AvailablePositive3734440 - 3734524Not Available
trna ribosyltransferase-isomeraseAN403_2651Q3K795Positive3734632 - 373568138274.8
trna-guanine transglycosylaseAN403_2652Q88PL7Positive3735678 - 373681141873.8
preprotein translocase, yajc subunitAN403_2653P0ADZ9Positive3736855 - 373719011897.7
export membrane protein secdAN403_2654Q9HXI1Positive3737255 - 373912367170.5
export membrane protein secfAN403_2655Q9HXI2Positive3739133 - 374004733271.8
glycine zipper 2tm domain proteinAN403_2656P0AB36Positive3740168 - 374071618956.7
inositol monophosphatase family proteinAN403_2657Q9HXI4Negative3740977 - 374179529753.5
rna methyltransferase, trmh, group 1 family proteinAN403_2658A0A0H2ZF87Positive3741942 - 374271228323.1

Displaying genes 3481 – 3490 of 6270 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

412 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000232(4S)-perillyl alcoholC10H16OChemical structure of (4S)-perillyl alcoholNot available
Average152.237Da
Monoisotopic152.1201151Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da

Displaying 1–10 of 412 metabolites

Health Effects

Health ConditionRelationReference
Bacterial infectionsCausesPMC7578172

Displaying health effects 1 – 1 of 1 in total