Bacteroides sp. SM23_62

Rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Bacteroides

Description

Bacteroides sp. SM23_62 is a rod-shaped bacterium characterized by the presence of flagella, which suggest a potential for motility. This species is notable for having a single replicon, indicating a streamlined genetic organization that may impact its replication and stability in various environments. The genomic information for Bacteroides sp. SM23_62 is cataloged under the accession number LJUP00000000.1, providing a reference point for further studies and comparative analyses. Bacteroides species are known to play significant roles in various ecosystems, particularly in the human gut microbiome, where they contribute to the digestion of complex carbohydrates and the maintenance of gut health. The motility conferred by flagella may allow Bacteroides sp. SM23_62 to navigate through the intestinal environment effectively, aiding in its survival and colonization. The presence of a single replicon could also suggest an adaptation to specific ecological niches, potentially allowing for efficient resource utilization. Understanding the traits of Bacteroides sp. SM23_62 can enhance our knowledge of microbial dynamics within the gut and their implications for health and disease. Further research may elucidate its specific roles and interactions within microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides sp. SM23_62
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Bacteroides sp. SM23_62 WORSMTZ_104106, whole genome shotgun

Gene Summary

Adenine Count

1569975 bp

Thymine Count

1559392 bp

Guanine Count

1331084 bp

Cytosine Count

1324231 bp

Genome Length

5784682 bp

Protein-coding Genes

4378 genes

Non-Coding Genes

35 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sugar phosphate isomeraseAMS26_06100Not AvailableNegative1442981 - 144396436778.4
hypothetical proteinAMS26_06105Not AvailableNegative1444475 - 144486114374.5
serine hydroxymethyltransferaseAMS26_06110A6LBG7Positive1445109 - 144638946966.7
hypothetical proteinAMS26_06115P29942Positive1446463 - 144722427164.8
hypothetical proteinAMS26_06125Not AvailableNegative1447924 - 144916246316.5
biopolymer transporter exbdAMS26_06135Not AvailableNegative1450230 - 145062214682.1
biopolymer transporter exbbAMS26_06140O27101Negative1450624 - 145131625338.4
sodium:proton antiporterAMS26_06145Q9LT68Negative1451411 - 145279650813.5
hypothetical proteinAMS26_06150Not AvailableNegative1452859 - 1457337169880.0
trna threonylcarbamoyladenosine biosynthesis protein tsabAMS26_06155Q5LCF3Positive1457493 - 145851236334.0

Displaying genes 1111 – 1120 of 4413 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

217 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000315acetylpyruvateC5H6O4Chemical structure of acetylpyruvateNot available
Average130.099Da
Monoisotopic130.0266087Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000430hercynineC9H15N3O2Chemical structure of hercynineNot available
Average197.238Da
Monoisotopic197.1164267Da

Displaying 1–10 of 217 metabolites

Health Effects

No health effects information available for this bacterium.