Vibrio alginolyticus strain UCD-9C

Motilefacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio alginolyticus strain UCD-9C is a gram-negative bacterium primarily found in marine habitats. This organism is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. It possesses flagella, which contribute to its mobility, allowing it to navigate through aquatic environments efficiently. The optimal growth temperature for this strain is around 30°C. This bacterium has been associated with various hosts, including humans (Homo sapiens), the European sea bass (Sparus aurata), mollusks, and the Pacific white shrimp (Penaeus vannamei). It is known to cause several health issues, particularly in marine organisms and humans. In humans, V. alginolyticus can lead to conditions such as septicaemia, vibriosis, and gastroenteritis. In aquatic hosts, it is linked to skin and muscle necrosis, as well as diseases affecting farmed shrimp, fish, and mollusks. The single replicon nature of strain UCD-9C suggests a streamlined genetic structure, which may contribute to its adaptability in marine environments. Understanding the ecological role and pathogenic potential of V. alginolyticus strain UCD-9C is critical, particularly in the context of aquaculture and public health, as its presence in marine ecosystems can have significant implications for both human health and the health of marine species.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio alginolyticus
Strainstrain UCD-9C

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Vibrio alginolyticus strain UCD-9C
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsfacultative anaerobe
Optimal temperature30
Temperature rangeNot Available
HabitatMarine
Biotic relationshipNot Available
Host(s)Homo sapiens, Sparus aurata, Mollusca
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio alginolyticus strain UCD-9C


Gene Summary

Adenine Count

1640871 bp

Thymine Count

1628964 bp

Guanine Count

1305388 bp

Cytosine Count

1286854 bp

Genome Length

5862215 bp

Protein-coding Genes

5176 genes

Non-Coding Genes

189 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
DaraAOG25_17345O21970Negative3751196 - 3755989178814.0
HdfAOG25_17350Not AvailableNegative3755986 - 375661223550.8
Lysis determining protein lydbAOG25_17355Not AvailableNegative3756605 - 375701515635.0
hypothetical proteinAOG25_17360Not AvailableNegative3757015 - 375733811174.6
hypothetical proteinAOG25_17365Not AvailableNegative3757465 - 37577199853.05
Long tail fiber distal subunitAOG25_17370Not AvailableNegative3757740 - 376036793968.3
Putative tail fiber proteinAOG25_17375Not AvailableNegative3760462 - 376158038489.4
Tail fiber repeat family proteinAOG25_17380Not AvailableNegative3761652 - 376291146048.1
hypothetical proteinAOG25_17385Not AvailableNegative3762911 - 376337216850.0
Putative baseplate structural proteinAOG25_17395Not AvailableNegative3764390 - 376578752660.4

Displaying genes 1 – 10 of 5365 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

242 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000305tetrathionateO6S4Chemical structure of tetrathionateNot available
Average224.24Da
Monoisotopic223.8588696Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 242 metabolites

Health Effects

Health ConditionRelationReference
Skin and muscle necrosisCausesPMC10724927
VibriosisCausesPMC8416912
GastroenteritisCausesPMC8416912
SepticaemiaCausesPMC8416912
Diseases in farmed shrimp, fish, and molluscsCausesPMC12075680

Displaying health effects 1 – 5 of 5 in total