Cobetia sp. UCD-24C

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Oceanospirillales

Family

Halomonadaceae

Genus

Cobetia

Description

Cobetia sp. UCD-24C is characterized by having a single replicon in its genomic structure. The organism is documented under the accession number LJTD00000000.1, which serves as a reference for its genetic information. Cobetia species are known to be marine bacteria, often associated with various ecological niches within oceanic environments. While specific ecological roles of Cobetia sp. UCD-24C are not detailed here, the genus is typically recognized for its potential in biogeochemical cycling and interactions with marine ecosystems. Marine bacteria like Cobetia play critical roles in nutrient cycling, contributing to the overall health and stability of marine environments. The presence of a single replicon suggests a streamlined genomic organization, which may be advantageous for the organism's adaptability to marine conditions. This trait can influence the organism's metabolic capabilities and ecological interactions, potentially allowing it to thrive in specific niches within its habitat. In summary, Cobetia sp. UCD-24C, with its single replicon and documented genetic accession, is positioned within a broader context of marine bacteria that contribute significantly to marine ecosystems, although specific insights into its ecological role require further study.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderOceanospirillales
FamilyHalomonadaceae
GenusCobetia
SpeciesCobetia sp. UCD-24C
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Cobetia sp. UCD-24C scaffold_50, whole genome shotgun sequence.

Gene Summary

Adenine Count

794948 bp

Thymine Count

789106 bp

Guanine Count

1319482 bp

Cytosine Count

1326422 bp

Genome Length

4229986 bp

Protein-coding Genes

3104 genes

Non-Coding Genes

90 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
zinc metallopeptidase rsepAOG28_11790Q9HXY3Negative2865102 - 286645747991.6
1-deoxy-d-xylulose 5-phosphate reductoisomeraseAOG28_11795B1JBQ4Negative2866546 - 286774842528.3
phosphatidate cytidylyltransferaseAOG28_11800Q59640Negative2867802 - 286860528805.0
farnesyl-diphosphate synthaseAOG28_11805Q8ZH61Negative2868605 - 286934827880.1
ribosome-recycling factorAOG28_11810Q1R030Negative2869403 - 286996020611.6
uridylate kinaseAOG28_11815Q1R031Negative2869965 - 287072627143.1
elongation factor tsAOG28_11820Q1R032Negative2870819 - 287168830784.9
30s ribosomal protein s2AOG28_11825Q1R033Negative2871867 - 287260127042.6
methionine aminopeptidaseAOG28_11830P0A1X7Positive2872917 - 287370829073.9
protein-pii uridylyltransferaseAOG28_11835A4XWU3Positive2873714 - 2876425103179.0

Displaying genes 2171 – 2180 of 3194 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

238 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 238 metabolites

Health Effects

No health effects information available for this bacterium.