Pseudomonas coronafaciens pv. zizaniae strain ICMP8921

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas coronafaciens pv. zizaniae strain ICMP8921 is characterized by having a single replicon, which is an important trait for its genetic stability and replication mechanism. The strain is cataloged under the accession number LJRT00000000.1, indicating its inclusion in a genomic database for further reference and analysis. This bacterium is part of the Pseudomonas genus, which is known for its diverse metabolic capabilities and ecological versatility. Pseudomonas species are often found in various environments, including soil, water, and plant surfaces, where they can play significant roles in nutrient cycling and plant health. The specific pathovar designation "pv. zizaniae" suggests an association with the plant species Zizania, commonly known as wild rice. Understanding the interactions between Pseudomonas coronafaciens pv. zizaniae and its plant host could provide insights into plant-microbe interactions, particularly in terms of pathogenicity or beneficial effects. The single replicon characteristic also implies a streamlined genomic architecture, which may contribute to efficient adaptation to environmental changes, a trait often observed in plant-associated bacteria. Overall, the traits of Pseudomonas coronafaciens pv. zizaniae strain ICMP8921 highlight its potential significance in agricultural microbiology, particularly in the context of Zizania cultivation and management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas coronafaciens
Strainpv. zizaniae strain ICMP8921

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas coronafaciens pv. zizaniae strain ICMP8921
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas coronafaciens pv. zizaniae strain ICMP8921

Gene Summary

Adenine Count

1203674 bp

Thymine Count

1214318 bp

Guanine Count

1660726 bp

Cytosine Count

1650320 bp

Genome Length

5729167 bp

Protein-coding Genes

4980 genes

Non-Coding Genes

164 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lipid ii flippase ftswALO38_00803Not AvailablePositive5301702 - 530291643949.8
udp-n-acetylglucosamine--n-acetylmuramyl- pyrophosphoryl-undecaprenol n-acetylglucosamine transferaseALO38_00804Not AvailablePositive5302906 - 530397637808.2
udp-n-acetylmuramate--l-alanine ligaseALO38_00805Not AvailablePositive5303969 - 530542952734.7
d-alanine--d-alanine ligaseALO38_00806Not AvailablePositive5305426 - 530638534010.8
cell division protein ftsqALO38_00807Not AvailablePositive5306389 - 530725832718.7
cell division protein ftsaALO38_00808Not AvailablePositive5307273 - 530852944555.8
cell division protein ftszALO38_101094Not AvailablePositive5308618 - 530980541588.2
udp-3-o- n-acetylglucosamine deacetylaseALO38_00809Not AvailablePositive5309918 - 531082933271.8
uncharacterized proteinALO38_04648Not AvailableNegative5310940 - 531140117469.3
protein translocase subunit secaALO38_00810Not AvailablePositive5311689 - 5314448104079.0

Displaying genes 4781 – 4790 of 5144 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.