Pseudomonas coronafaciens pv. zizaniae strain ICMP8921

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas coronafaciens pv. zizaniae strain ICMP8921 is characterized by having a single replicon, which is an important trait for its genetic stability and replication mechanism. The strain is cataloged under the accession number LJRT00000000.1, indicating its inclusion in a genomic database for further reference and analysis. This bacterium is part of the Pseudomonas genus, which is known for its diverse metabolic capabilities and ecological versatility. Pseudomonas species are often found in various environments, including soil, water, and plant surfaces, where they can play significant roles in nutrient cycling and plant health. The specific pathovar designation "pv. zizaniae" suggests an association with the plant species Zizania, commonly known as wild rice. Understanding the interactions between Pseudomonas coronafaciens pv. zizaniae and its plant host could provide insights into plant-microbe interactions, particularly in terms of pathogenicity or beneficial effects. The single replicon characteristic also implies a streamlined genomic architecture, which may contribute to efficient adaptation to environmental changes, a trait often observed in plant-associated bacteria. Overall, the traits of Pseudomonas coronafaciens pv. zizaniae strain ICMP8921 highlight its potential significance in agricultural microbiology, particularly in the context of Zizania cultivation and management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas coronafaciens
Strainpv. zizaniae strain ICMP8921

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas coronafaciens pv. zizaniae strain ICMP8921
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas coronafaciens pv. zizaniae strain ICMP8921

Gene Summary

Adenine Count

1203674 bp

Thymine Count

1214318 bp

Guanine Count

1660726 bp

Cytosine Count

1650320 bp

Genome Length

5729167 bp

Protein-coding Genes

4980 genes

Non-Coding Genes

164 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cytochrome d ubiquinol oxidase, subunit iiALO38_03025Not AvailableNegative3639582 - 364058937332.8
cytochrome bd ubiquinol oxidase, subunit iALO38_03026Not AvailableNegative3640593 - 364203253458.5
hypothetical proteinALO38_05248Not AvailablePositive3642051 - 36421824728.7
aldehyde oxidase and xanthine dehydrogenase family proteinALO38_05249Not AvailableNegative3642533 - 364479481585.1
molybdopterin dehydrogenase, fad-binding:co dehydrogenaseALO38_03028Not AvailableNegative3644731 - 364572035071.9
iron-sulfur cluster-binding proteinALO38_100010Not AvailableNegative3645717 - 364628020051.9
xanthine/uracil/vitamin c permeaseALO38_03029Not AvailablePositive3646513 - 364780845073.6
trna/tmrna -methyltransferaseALO38_03030Not AvailablePositive3647805 - 364889041191.0
uncharacterized proteinALO38_03031Not AvailablePositive3649122 - 365040845422.9
uncharacterized proteinALO38_05250Not AvailablePositive3650462 - 365146335715.0

Displaying genes 3251 – 3260 of 5144 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.