Pseudomonas coronafaciens pv. zizaniae strain ICMP8921

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas coronafaciens pv. zizaniae strain ICMP8921 is characterized by having a single replicon, which is an important trait for its genetic stability and replication mechanism. The strain is cataloged under the accession number LJRT00000000.1, indicating its inclusion in a genomic database for further reference and analysis. This bacterium is part of the Pseudomonas genus, which is known for its diverse metabolic capabilities and ecological versatility. Pseudomonas species are often found in various environments, including soil, water, and plant surfaces, where they can play significant roles in nutrient cycling and plant health. The specific pathovar designation "pv. zizaniae" suggests an association with the plant species Zizania, commonly known as wild rice. Understanding the interactions between Pseudomonas coronafaciens pv. zizaniae and its plant host could provide insights into plant-microbe interactions, particularly in terms of pathogenicity or beneficial effects. The single replicon characteristic also implies a streamlined genomic architecture, which may contribute to efficient adaptation to environmental changes, a trait often observed in plant-associated bacteria. Overall, the traits of Pseudomonas coronafaciens pv. zizaniae strain ICMP8921 highlight its potential significance in agricultural microbiology, particularly in the context of Zizania cultivation and management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas coronafaciens
Strainpv. zizaniae strain ICMP8921

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas coronafaciens pv. zizaniae strain ICMP8921
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas coronafaciens pv. zizaniae strain ICMP8921

Gene Summary

Adenine Count

1203674 bp

Thymine Count

1214318 bp

Guanine Count

1660726 bp

Cytosine Count

1650320 bp

Genome Length

5729167 bp

Protein-coding Genes

4980 genes

Non-Coding Genes

164 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative monovalent cation/h+ antiporter subunit fALO38_00609Not AvailableNegative3388691 - 338896910147.1
putative monovalent cation/h+ antiporter subunit eALO38_00610Not AvailableNegative3388966 - 338945418242.0
putative monovalent cation/h+ antiporter subunit dALO38_00611Not AvailableNegative3389451 - 339113660053.8
potassium efflux system protein phacALO38_00612Not AvailableNegative3391133 - 339147712274.4
putative monovalent cation/h+ antiporter subunit aALO38_04617Not AvailableNegative3391477 - 3394395105577.0
uncharacterized proteinALO38_04618Not AvailableNegative3394556 - 339553634341.0
helix-hairpin-helix dna-binding motif-containing proteinALO38_04619Not AvailablePositive3395590 - 339617121374.3
uncharacterized proteinALO38_00616Not AvailablePositive3396217 - 339763251559.7
sigma-54 dependent transcriptional regulatorALO38_00617Not AvailableNegative3397679 - 339878541296.6
alkanesulfonate monooxygenaseALO38_00618Not AvailableNegative3398785 - 339998143662.9

Displaying genes 3021 – 3030 of 5144 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.