Pseudomonas coronafaciens pv. zizaniae strain ICMP8921

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas coronafaciens pv. zizaniae strain ICMP8921 is characterized by having a single replicon, which is an important trait for its genetic stability and replication mechanism. The strain is cataloged under the accession number LJRT00000000.1, indicating its inclusion in a genomic database for further reference and analysis. This bacterium is part of the Pseudomonas genus, which is known for its diverse metabolic capabilities and ecological versatility. Pseudomonas species are often found in various environments, including soil, water, and plant surfaces, where they can play significant roles in nutrient cycling and plant health. The specific pathovar designation "pv. zizaniae" suggests an association with the plant species Zizania, commonly known as wild rice. Understanding the interactions between Pseudomonas coronafaciens pv. zizaniae and its plant host could provide insights into plant-microbe interactions, particularly in terms of pathogenicity or beneficial effects. The single replicon characteristic also implies a streamlined genomic architecture, which may contribute to efficient adaptation to environmental changes, a trait often observed in plant-associated bacteria. Overall, the traits of Pseudomonas coronafaciens pv. zizaniae strain ICMP8921 highlight its potential significance in agricultural microbiology, particularly in the context of Zizania cultivation and management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas coronafaciens
Strainpv. zizaniae strain ICMP8921

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas coronafaciens pv. zizaniae strain ICMP8921
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas coronafaciens pv. zizaniae strain ICMP8921

Gene Summary

Adenine Count

1203674 bp

Thymine Count

1214318 bp

Guanine Count

1660726 bp

Cytosine Count

1650320 bp

Genome Length

5729167 bp

Protein-coding Genes

4980 genes

Non-Coding Genes

164 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
binding-protein dependent transport system inner membrane proteinALO38_01427Not AvailablePositive3104930 - 310580831093.7
peptide abc transporter atp-binding proteinALO38_01428Not AvailablePositive3105810 - 310765165554.5
succinic semialdehyde dehydrogenaseALO38_01429Not AvailablePositive3111767 - 311322451986.7
d-isomer specific 2-hydroxyacid dehydrogenase family proteinALO38_04854Not AvailableNegative3113406 - 311442537863.1
4-aminobutyrate aminotransferaseALO38_04855Not AvailablePositive3114606 - 311592547279.5
putative had superfamily hydrolaseALO38_01432Not AvailablePositive3115989 - 311666325237.4
asnc family transcriptional regulatorALO38_01433Not AvailablePositive3116707 - 311719818628.7
uncharacterized proteinALO38_01434Not AvailableNegative3117255 - 311771317600.7
peptide abc transporter atp-binding proteinALO38_01435Not AvailableNegative3117897 - 311948058568.4
binding-protein dependent transport system inner membrane proteinALO38_01436Not AvailableNegative3119482 - 312050437897.6

Displaying genes 2791 – 2800 of 5144 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.