Pseudomonas coronafaciens pv. zizaniae strain ICMP8921

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas coronafaciens pv. zizaniae strain ICMP8921 is characterized by having a single replicon, which is an important trait for its genetic stability and replication mechanism. The strain is cataloged under the accession number LJRT00000000.1, indicating its inclusion in a genomic database for further reference and analysis. This bacterium is part of the Pseudomonas genus, which is known for its diverse metabolic capabilities and ecological versatility. Pseudomonas species are often found in various environments, including soil, water, and plant surfaces, where they can play significant roles in nutrient cycling and plant health. The specific pathovar designation "pv. zizaniae" suggests an association with the plant species Zizania, commonly known as wild rice. Understanding the interactions between Pseudomonas coronafaciens pv. zizaniae and its plant host could provide insights into plant-microbe interactions, particularly in terms of pathogenicity or beneficial effects. The single replicon characteristic also implies a streamlined genomic architecture, which may contribute to efficient adaptation to environmental changes, a trait often observed in plant-associated bacteria. Overall, the traits of Pseudomonas coronafaciens pv. zizaniae strain ICMP8921 highlight its potential significance in agricultural microbiology, particularly in the context of Zizania cultivation and management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas coronafaciens
Strainpv. zizaniae strain ICMP8921

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas coronafaciens pv. zizaniae strain ICMP8921
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas coronafaciens pv. zizaniae strain ICMP8921

Gene Summary

Adenine Count

1203674 bp

Thymine Count

1214318 bp

Guanine Count

1660726 bp

Cytosine Count

1650320 bp

Genome Length

5729167 bp

Protein-coding Genes

4980 genes

Non-Coding Genes

164 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pupr proteinALO38_04510Not AvailableNegative2730182 - 273134241994.4
rna polymerase sigma factorALO38_00230Not AvailableNegative2731144 - 273168320740.9
non-ribosomal peptide synthetase syfaALO38_00231Not AvailableNegative2731909 - 27321488622.08
syringofactin operon regulator syfrALO38_100788Not AvailablePositive2732216 - 273271318319.0
quinoproteinALO38_00232Not AvailableNegative2732640 - 273500085348.9
putative sugar-binding regionALO38_04513Not AvailableNegative2735073 - 273608036483.1
putative ribose 5-phosphate isomerase bALO38_00234Not AvailableNegative2736117 - 273657816240.4
monosaccharide abc transporter atp-binding protein, cut2 familyALO38_00235Not AvailablePositive2736860 - 273834753621.9
periplasmic binding protein/laci transcriptional regulatorALO38_00236Not AvailablePositive2739365 - 274038436603.9
short chain dehydrogenaseALO38_04514Not AvailablePositive2740509 - 274131828424.2

Displaying genes 2461 – 2470 of 5144 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.