Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | strain ICMP2848 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1207440 bp
Thymine Count
1189932 bp
Guanine Count
1743648 bp
Cytosine Count
1759805 bp
Genome Length
5902031 bp
Protein-coding Genes
4909 genes
Non-Coding Genes
102 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| endonuclease/exonuclease/phosphatase family protein | ALO56_02712 | Not Available | Positive | 21174 - 22049 | 32382.2 |
| diguanylate cye | ALO56_02713 | Not Available | Positive | 22046 - 24136 | 77248.5 |
| n-acetylmuramoyl-l-alanine amidase | ALO56_02714 | P75820 | Positive | 24231 - 25010 | 29144.7 |
| cyclic diguanylate phosphodiesterase | ALO56_100789 | P32701 | Positive | 25064 - 26710 | 60282.3 |
| pas-like protein | ALO56_02715 | O34206 | Negative | 27025 - 28812 | 66310.3 |
| helix-turn-helix, fis-type | ALO56_02716 | Q88AQ2 | Negative | 28823 - 30169 | 49493.2 |
| uncharacterized protein | ALO56_02717 | Not Available | Positive | 30367 - 31212 | 29739.4 |
| membrane protein | ALO56_02718 | Q48PW5 | Positive | 31790 - 31954 | 5724.41 |
| uncharacterized protein | ALO56_02719 | Q9HT89 | Positive | 31957 - 32421 | 16981.2 |
| glutamate/aspartate:proton symporter | ALO56_02720 | P21345 | Positive | 33056 - 34387 | 47410.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |









