Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | strain ICMP2848 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1207440 bp
Thymine Count
1189932 bp
Guanine Count
1743648 bp
Cytosine Count
1759805 bp
Genome Length
5902031 bp
Protein-coding Genes
4909 genes
Non-Coding Genes
102 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| n utilization substance protein b -like protein | ALO56_100099 | Q48DC2 | Positive | 866568 - 867065 | 18637.1 |
| thiamine-monophosphate kinase | ALO56_01639 | P0AGG1 | Positive | 867082 - 868047 | 33280.0 |
| gtp cyclohydrolase-2 | ALO56_01640 | Q889Q3 | Positive | 868198 - 868815 | 22102.8 |
| permease of the major facilitator superfamily | ALO56_100065 | Not Available | Positive | 868812 - 869231 | 15269.4 |
| 1-deoxy-d-xylulose-5-phosphate synthase | ALO56_04686 | Q889Q1 | Negative | 869323 - 871251 | 69456.1 |
| geranyltranstransferase | ALO56_01642 | P22939 | Negative | 871376 - 872263 | 31377.4 |
| exodeoxyribonuclease 7 small subunit | ALO56_01643 | Q4ZYU6 | Negative | 872260 - 872505 | 9036.5 |
| cystathionine beta-lyase | ALO56_04687 | Q07703 | Negative | 872632 - 873831 | 43598.4 |
| s-transferase | ALO56_01645 | Q46845 | Negative | 873915 - 874757 | 31301.9 |
| autotransporter | ALO56_01646 | Not Available | Positive | 875099 - 877393 | 79705.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |









