Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | strain ICMP2848 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1207440 bp
Thymine Count
1189932 bp
Guanine Count
1743648 bp
Cytosine Count
1759805 bp
Genome Length
5902031 bp
Protein-coding Genes
4909 genes
Non-Coding Genes
102 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| binding-protein dependent transport system inner membrane protein | ALO56_03999 | Q7LYX6 | Positive | 780159 - 780992 | 31002.7 |
| abc transporter | ALO56_04000 | P54933 | Positive | 781024 - 782130 | 39974.6 |
| d-mannonate oxidoreductase/xylulokinase | ALO56_05162 | Q0UEB6 | Positive | 782134 - 783332 | 44437.1 |
| glycosyl transferase family protein | ALO56_01519 | P26403 | Negative | 783429 - 784355 | 34952.2 |
| molybdenum cofactor biosynthesis protein | ALO56_01520 | P45210 | Negative | 784439 - 785338 | 32370.1 |
| glutamate synthase subunit beta | ALO56_00984 | E1V8I0 | Negative | 785588 - 787006 | 51777.0 |
| glutamate synthase subunit alpha | ALO56_04546 | E1V8I1 | Negative | 787128 - 791579 | 162647.0 |
| uncharacterized protein | ALO56_04548 | Not Available | Negative | 791933 - 793561 | 56105.5 |
| 3-dehydroquinate synthase | ALO56_100237 | Q48PH0 | Negative | 793571 - 794734 | 42208.1 |
| shikimate kinase | ALO56_00986 | Q87V14 | Negative | 794800 - 795291 | 18059.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |









