Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | strain ICMP2848 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1207440 bp
Thymine Count
1189932 bp
Guanine Count
1743648 bp
Cytosine Count
1759805 bp
Genome Length
5902031 bp
Protein-coding Genes
4909 genes
Non-Coding Genes
102 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pyruvate decarboxylase:pyruvate decarboxylase | ALO56_01842 | Q5KYR0 | Positive | 669219 - 671156 | 70379.0 |
| inositol 2-dehydrogenase | ALO56_01843 | Q48GY3 | Positive | 671169 - 672224 | 38104.8 |
| oxidoreductase, gfo/idh/moca family | ALO56_100238 | O32223 | Positive | 672269 - 673327 | 38578.4 |
| uncharacterized protein | ALO56_01844 | Not Available | Positive | 673565 - 673735 | 6153.81 |
| sugar abc transporter periplasmic sugar-binding protein | ALO56_01845 | Not Available | Positive | 673814 - 674743 | 32930.9 |
| abc transporter | ALO56_01846 | Not Available | Positive | 674806 - 676383 | 57307.0 |
| sugar abc transporter permease | ALO56_01847 | Not Available | Positive | 676444 - 677469 | 35554.6 |
| rna polymerase-binding protein dksa | ALO56_100104 | P0CAU3 | Positive | 677718 - 678176 | 17642.0 |
| methyl-accepting chemotaxis protein | ALO56_01848 | Q88E10 | Positive | 678358 - 679935 | 57329.9 |
| uncharacterized protein | ALO56_01849 | Not Available | Positive | 680212 - 681696 | 54221.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |









