Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | strain ICMP2848 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1207440 bp
Thymine Count
1189932 bp
Guanine Count
1743648 bp
Cytosine Count
1759805 bp
Genome Length
5902031 bp
Protein-coding Genes
4909 genes
Non-Coding Genes
102 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| translation initiation factor if-2 | ALO56_01054 | Q48E77 | Positive | 5581889 - 5584423 | 91068.0 |
| ribosome-binding factor a | ALO56_01055 | Q48E78 | Positive | 5584583 - 5584999 | 15410.5 |
| trna pseudouridine synthase b | ALO56_01056 | Q4ZNR4 | Positive | 5585003 - 5585920 | 33531.1 |
| 30s ribosomal protein s15 | ALO56_01057 | Q48E80 | Positive | 5586059 - 5586349 | 10852.3 |
| hypothetical protein | ALO56_100595 | Not Available | Negative | 5586432 - 5586599 | 6075.39 |
| polyribonucleotide nucleotidyltransferase | ALO56_01058 | Q4ZNR6 | Positive | 5586525 - 5588630 | 74977.5 |
| osmotically inducible protein | ALO56_01059 | Not Available | Positive | 5588917 - 5589270 | 12173.8 |
| uncharacterized protein | ALO56_01060 | Not Available | Negative | 5589409 - 5589732 | 12049.4 |
| uncharacterized protein | ALO56_01061 | Not Available | Negative | 5589738 - 5592716 | 109549.0 |
| sam-dependent methyltransferase | ALO56_04562 | P39587 | Negative | 5592825 - 5593862 | 38428.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |









