Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | strain ICMP2848 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1207440 bp
Thymine Count
1189932 bp
Guanine Count
1743648 bp
Cytosine Count
1759805 bp
Genome Length
5902031 bp
Protein-coding Genes
4909 genes
Non-Coding Genes
102 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| exonuclease sbcd | ALO56_04218 | O68033 | Positive | 5133279 - 5134523 | 46004.8 |
| exonuclease sbcc | ALO56_04219 | Q9HWB8 | Positive | 5134520 - 5138167 | 137012.0 |
| glutathione s-transferase | ALO56_04220 | Not Available | Positive | 5138164 - 5138763 | 23302.0 |
| uncharacterized protein | ALO56_04221 | Not Available | Negative | 5139010 - 5139201 | 6726.87 |
| uncharacterized protein | ALO56_04222 | O34499 | Negative | 5139380 - 5140552 | 42486.5 |
| hypothetical protein | ALO56_100770 | Q5H054 | Positive | 5141376 - 5142284 | 33784.3 |
| cell division protein zipa -like protein | ALO56_02156 | Q4ZVF7 | Positive | 5142537 - 5143412 | 32745.9 |
| dna ligase | ALO56_02157 | Q4ZVF6 | Positive | 5143536 - 5145884 | 85735.8 |
| helicase domain protein | ALO56_100533 | O27830 | Positive | 5146177 - 5148696 | 93374.5 |
| deoxycytidine triphosphate deaminase | ALO56_04825 | Q87XN2 | Negative | 5149741 - 5150313 | 21496.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |









