Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | strain ICMP2848 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1207440 bp
Thymine Count
1189932 bp
Guanine Count
1743648 bp
Cytosine Count
1759805 bp
Genome Length
5902031 bp
Protein-coding Genes
4909 genes
Non-Coding Genes
102 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| taud/tfda family dioxygenase | ALO56_00953 | Q700X4 | Negative | 4963467 - 4964363 | 33056.4 |
| phosphoesterase | ALO56_00954 | Not Available | Positive | 4964468 - 4964926 | 16748.3 |
| acetyltransferase | ALO56_00955 | Not Available | Negative | 4964949 - 4965407 | 17890.0 |
| serine-threonine kinase stk1 | ALO56_00956 | Q9XBQ0 | Negative | 4965466 - 4966338 | 32537.3 |
| type vi secretion protein icmf | ALO56_00957 | Q9I755 | Negative | 4966371 - 4969877 | 132087.0 |
| putative outer membrane protein | ALO56_00958 | Not Available | Negative | 4969874 - 4970761 | 33687.5 |
| uncharacterized protein | ALO56_00959 | Q9I753 | Negative | 4970761 - 4972092 | 49261.3 |
| lipoprotein | ALO56_00960 | Not Available | Negative | 4972095 - 4972583 | 18119.7 |
| uncharacterized protein | ALO56_00961 | Not Available | Negative | 4972599 - 4973759 | 43306.7 |
| sigma-54 dependent transcriptional regulator | ALO56_00962 | P31908 | Negative | 4973942 - 4975471 | 56416.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |









