Pseudomonas viridiflava strain ICMP2848

RodMotileaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas viridiflava strain ICMP2848 is a Gram-negative, aerobic, rod-shaped bacterium found in a variety of habitats, including epilithic biofilms, freshwater environments, and agricultural settings such as irrigation water and rain-soaked litter. This species is known for its mobility and free-living lifestyle, allowing it to thrive in diverse ecological niches, including icepacks and snowpack. Pseudomonas viridiflava has a broad range of hosts, including several economically important plants such as Solanum tuberosum (potato), Solanum lycopersicum (tomato), and various species of the genus Arabidopsis. It also interacts with other plants and organisms, including Homo sapiens and Gallus gallus (chickens), indicating its versatility in different biological contexts. The bacterium is associated with several plant diseases, leading to significant agricultural impacts. It can cause soft rot, necrosis, and cankers, as well as specific ailments such as kiwifruit blossom blight and bacterial stem blight disease. These health effects manifest as spots, streaks, and rots on affected plants, which can lead to reduced crop yields and quality. Understanding the ecological role of Pseudomonas viridiflava is essential, particularly in its interactions with plant hosts and its contribution to disease. Its ability to inhabit various environments and affect a wide range of hosts underscores its significance in both natural ecosystems and agricultural systems, highlighting the importance of monitoring and managing this bacterium to mitigate its negative impacts on plant health and productivity.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas viridiflava
Strainstrain ICMP2848

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas viridiflava strain ICMP2848
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatepilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack
Biotic relationshipFree-living
Host(s)Homo sapiens, Gallus gallus, Viridiplantae
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas viridiflava strain ICMP2848 PvrICMP2848_Contig_120,

Gene Summary

Adenine Count

1207440 bp

Thymine Count

1189932 bp

Guanine Count

1743648 bp

Cytosine Count

1759805 bp

Genome Length

5902031 bp

Protein-coding Genes

4909 genes

Non-Coding Genes

102 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
3-isopropylmalate dehydratase small subunitALO56_01451Q48K98Negative4906462 - 490710324153.5
3-isopropylmalate dehydratase large subunitALO56_01452Q4ZUZ6Negative4907114 - 490853851034.1
regulatory protein lysrALO56_04662P96194Positive4908653 - 490954032755.8
pas:ggdef-like proteinALO56_01454Not AvailablePositive4909633 - 491183181590.8
heat shock protein hsp20ALO56_01455P96193Negative4911875 - 491231816601.5
pp_04129ALO56_01456Not AvailableNegative4912420 - 4913400Not Available
uncharacterized proteinALO56_01457Not AvailableNegative4913430 - 491395119476.1
Trna-gluNot AvailableNot AvailablePositive4914070 - 4914145Not Available
Trna-alaNot AvailableNot AvailablePositive4914191 - 4914266Not Available
Trna-gluNot AvailableNot AvailablePositive4914319 - 4914394Not Available

Displaying genes 4201 – 4210 of 5011 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

307 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da

Displaying 1–10 of 307 metabolites

Health Effects

Health ConditionRelationReference
SpotsCausesPMC8659605
StreaksCausesPMC8659605
NecrosisCausesPMC8659605
RotsCausesPMC8659605
Kiwifruit blossom blightCausesPMC8659605
Pith necrosisCausesPMC8659605
Bacterial stem blight diseaseCausesPMC8659605
Soft rotCausesPMC8659605
CankersCausesPMC11448091
Tomato pith necrosisCausesPMC12847849

Displaying health effects 1 – 10 of 11 in total